Gene Plim_0235 details

Gene Information

• Locus tag: Plim_0235
• ID: 9136890
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Planctomyces limnophilus DSM 3776
• Kingdom: Bacteria
• Replicon accession: NC_014148
• Strand: -
• Start bp: 303865
• End bp: 304419
• Gene Length: 555 bp
• Protein Length: 184 aa
• Translation table: 11
• GC content: 56%
• Product: RNA polymerase sigma factor, sigma-70 family
• Protein accession: YP_003628286
• Protein GI: 296120508

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTGTCAG CCGTTGACCA GGAATTGATG CAGCGAGTTC TCGAAGGAGA TCGAGCAGCC 
TTTTCACAGG TGATTGAACT GCATCAGCGT GCCATCTATG GCTTTCTGCG GGCACGACTG 
GCACAGGCGG CCGATGCGGA TGATCTCGTT CAGGAAGTGT TTCTGCGGTT CTACGAAGCA 
CGCACGCGGT TCGATTCGAC GTCATTGATC AGGCCATGGC TTCTGGGCAT TGCCCGCAAT 
GTCCTGCGGG AGTGGACACG AAGTGTCCGC CGCCGCCGGG AGGTGGGTTG GACAGAGCTT 
TGCTTCGACC TGGAATCGTT AACCGGGGGA GCTGCAGGGA CCTTGGATGC CGATGTGCTC 
GAAAACCTTC CTCAATGCCT CGAAGCGTTA GGGCCAAGTG CCCGCCAGGC CATTGAACTC 
AAGTATCGCT CGGAGCAGAA ACTGTGTGAT ATCGGGCACG TTCTTCGCCG CAGCGAAGGC 
GCTATCAAAC TGCTGGTACA TCGAGCCAGA CTGGCACTGA AAAGTTGTCT CGAACGAAAA 
CTGAAAAAAA TGTGA 

 

Protein sequence

MVSAVDQELM QRVLEGDRAA FSQVIELHQR AIYGFLRARL AQAADADDLV QEVFLRFYEA 
RTRFDSTSLI RPWLLGIARN VLREWTRSVR RRREVGWTEL CFDLESLTGG AAGTLDADVL 
ENLPQCLEAL GPSARQAIEL KYRSEQKLCD IGHVLRRSEG AIKLLVHRAR LALKSCLERK 
LKKM