Gene Plim_0229 details

Gene Information

• Locus tag: Plim_0229
• ID: 9136884
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Planctomyces limnophilus DSM 3776
• Kingdom: Bacteria
• Replicon accession: NC_014148
• Strand: +
• Start bp: 294702
• End bp: 295391
• Gene Length: 690 bp
• Protein Length: 229 aa
• Translation table: 11
• GC content: 54%
• Product: RNA polymerase sigma factor, sigma-70 family
• Protein accession: YP_003628280
• Protein GI: 296120502

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCACAGG AACCGTCTCC GACTGCGGAT GAGAACACTC GAGAACAGTG GTTGATTGCC 
CGCATTCGTG CCCAGGAGCC CGGTGCCTGG CGCGAACTTG TCGATCAGCA TGAACCCCGG 
CTTTTTGCCT GGATGAAATC CCGCACAGGG AACCGCTCGA CAGCCGAAGA TCTCGTACAG 
GAAGTCTTCC TCTCCTTTCT GAGGGCGTTG CCAAACTTTG ATGATTCGAG GCCCATCGAA 
CCCTTTATCA ATCAGATTGC CGCACATCTG CTGATTGATC ACTTACGCAA AGAGGGGAGA 
CGGCAGGTTG TCAGTACAGG AACCGTAGTT GACGATTCCT CATCGGGGCA CATGCCCTTC 
GAAAAACTTG TGCCGCAGGA TTCTCGACAA CTGAAGGCAT CGAGCATTTT TCGCGGTCGA 
GAAACGACCG CTGCGATTGA AGCCTGCCTG GCTCAAAGCC TGAAGGAACT TGTTCTCCGC 
TGGCAAAGTC GGGGAGAATT CGAGCGGCTC AAATGCTGCG AACTCATCAT TGCTAAAGGA 
TTCCCCAATC AACGAGTGGC GCAGCTCCTG TCGATCAGCG AACAGACTGT CGCCAACCAT 
AAGTCGTATC TGCTGCAGCA ACTTCGTCAG CGATTGGCAA AAGCCGGTCT TGCGGAGACA 
GTCTTGTCGC TGTTGATTGA CCGTCACTGA 

 

Protein sequence

MSQEPSPTAD ENTREQWLIA RIRAQEPGAW RELVDQHEPR LFAWMKSRTG NRSTAEDLVQ 
EVFLSFLRAL PNFDDSRPIE PFINQIAAHL LIDHLRKEGR RQVVSTGTVV DDSSSGHMPF 
EKLVPQDSRQ LKASSIFRGR ETTAAIEACL AQSLKELVLR WQSRGEFERL KCCELIIAKG 
FPNQRVAQLL SISEQTVANH KSYLLQQLRQ RLAKAGLAET VLSLLIDRH