| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_0197 |
|---|
| Symbol | |
|---|
| ID | 9136851 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 255994 |
|---|
| End bp | 259290 |
|---|
| Gene Length | 3297 bp |
|---|
| Protein Length | 1098 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | |
|---|
| Product | sigma-54 factor interaction domain-containing protein |
|---|
| Protein accession | YP_003628248 |
|---|
| Protein GI | 296120470 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.793641 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGCTG CCAGGCGATG GGTGCGGCCG GTGCTGGCAG CTTTGGGAGG TTGCTCTCTT
GTCTACTGCA TGATCGCTCT CGTCTATGTG GCCACAGCAC CTGATGTGAG ACTGCGCTGC
CTGCTGGTCG ACAAACCCCT GCAACCCGGC AAGTTGACGT CGATTATCAT CCGCAAGACC
CCTGGAATTG AATTCAAGGG GCCCAGGCCG CAACCTGGCG ATGAACTTCT CCGCATTGGT
GAGCAGAGAC TTGGCACGTC ACTCGATTTC TTCCGCTACA TGGACTGGCT ACGGACAGCC
CCCACACCAC CAGGTGGGCG AATGCTGGCG GGTGGGGATC CTTTAGAGCA GCAATTACCC
AAGCTGGTTC AGGAAGAAGG GGGGCCTCGC TGGGTCGAAA TCGAGTTTTA TCGCCCTGAA
GATGACAAAG TCTACGTTGC CTCACTGGCT GTTCAGGGTG TCCCGCTGGA TGAGATTGGG
CTCACTCTCG TCTGGTTTCT CTTCCAGCTC GCGATTTTTT CTGTGAGCGC CATCGCCTTC
TGGCGGCGTC CTTTTGACCA CCCCGCTCAA CTCTTTTTCT CCATGTGTCT GGTCACGATC
TCTGCATTCG TGGGCGGTTT TCACTGGTGG GTGATTGCAG GAAACCCCTG GCTCAATCTG
CCATTTGCGA TCACAGCCAT CATGGTGCCT GTGGTGACGT TTCACTTCTT CCTGATATAT
CCACGACCGA AACCACCCAT TGACCGCTAT TCGTTTGAGA CGCTGGTCGG CATCTATGCG
ATCCCCATCG CAGCTCTGGT GCTGTTTCTG CTGGCCGAAT GGTCGATCTG GTGGTTGATG
GCGACCACGG GAATTTCTGT GGAAGCCCGT GCCTTACAGA TGTTTGGCTG GCTCGTGGCC
CTGAAAAACG GGGTCTACAT CTATGTTTCG ATTGCTGCGT TTTACTTCGC CGGGATTATT
GCTGCGTTGG TGCACGGTTT CTGGACAACG CGCAATCCGG TTGAACGAAA TCAGGTCAAA
TGGATTCTCT GGGCCGGTCT GATTGCGACA CTTTTGATTG GCTACACACT GCTGCTGGCG
GGTGTCTCGC GGGCGGATTT TGCCCTGGGT GGCGGCCGCT GGCCAATGTT CTTTGCCAGT
CTGGTTTTCA TGCTGGCGTA TGCCGTTGGC ATCAGTCGTT TCAAACTGAT GCTGGTTGAT
CAGGTCGTCA GTCGTGGGAT GCTCTATTAT GTCTTGAGCT TTGGCACCAC TCTGGTGGTC
TCAATTGCCA TTGCGATGAC GGCTGTGGCA GCAGTCTCCT GGCGAGAGCA GTTAACGTCC
CCTCAACTTG TGGTCGTCGC GGCAATTCTC GTCGTGACTG TCGGCATGTT TCTCTGGGCA
CGGGATGTCT GGCAAAGGCT GGTTGATCGA AGATTTTTCC GCGAGAAGTA TCAGCTCGAT
AAAGTGCTGC AACGGATGAA TCGAGCCGTC GGACAACTGG CGGATGCCGA ATCGTTAGCA
CAGCGCATGG CAGGTTCTTG TCAGGATGTG ATACAGGCCG AACGCGCTGC GATCTATCTG
CGGGAAGGCC GCAGCACAAA CTTCCGTTTG ATTGCCGCCG AAGGCGTGTG GCCCAACGTC
TCAATGCAGA TTTCGACATC GGCTGATTTT GTGATGACAT TGGCGGCAGC GACCACACTC
CAGGCTGTCC CGGCGGCTTC ACGCGACAGT ATGAATCCGG TGCAGTCGTT TTTGCGAGAT
CTCCAGGCCG AACTGATTCA TGCCCTCGAA GTTGAAGGAG AACTTTCGGG CTTCGTGGTG
CTGGGGCCGC GGCAAACCAA TGGCGTCTAC TCCGCAGAAG ATATCACATT TCTGACCGCG
ATGGGGCAGA TCACCGGCGT GGCACTCCAT TGTGCCAAGG TGCATAAAGA TCTCAGTCGA
CTCAACGAAG AGCTTCGTTT GAAGGTTGAT CGAATCGAAC AGCAGAAGCA GCAGATCCTT
ATGTTGCAGG CCGAAATCAA CGAATCTCAG GAACCAGAAA GCCCGGCACC AGTCACTGAG
TTTAATCGCG GCATGATTCG CGGTTCCAGC CAGGCACTGA TGGAAGTGCT GGAAGTCGTT
CGCAAAGCCG CTGCCAGCGA TTCTTCAGTC CTGATTACTG GTGAGAGTGG CACTGGCAAA
GAACTATTGG CACAGGCGAT CCATGCCAAC AGTCCGCGTC GCGATGGACC TCTGGTCATT
GTCCATTGCG CTGCACTTTC GACAGGACTT TTAGAGAGTG AATTGTTTGG CCATGTGAAA
GGCTCATTTA CTGGCGCTTA TGCGGATAAG CCCGGTCGAT TTGAACTGGC CAATGGAGGC
ACACTCTTCC TGGATGAAAT TGGGGAAATC CCTCTCGAAA CGCAGGTCAA ATTGCTTCGC
GTTTTGCAGC AGCGAACCTT TGAACGAGTG GGGAGCAGTG AGACCTTACG CTGTGATGTT
CGTGTAGTAG CAGCAACCCA CAAAAATCTT GAACAGGCGA TTCGAGACAG CCGCTTCCGG
GAGGATTTAT ATTATCGCTT GAATGTCGTC CATATTGCCT TGCCTGCCCT GCGCGAACGC
AAAGACGATC TGTACGAACT CTTCCGGCAT TTTCTCAAAC AAGCCGCCAA CAAGACGGGG
AAGCGCGTCT TTCGCATCGA CGAAAGTGCA CTCGCAGCCT TGCTGGCCTA CCAATGGCCA
GGCAACATTC GCGAGCTTGA GAACGTGATT GAACGGGCTG TCGTTCTTTC GGAGTCGAAC
ACGGTCACTC TGGCGGATTT ACCTCCGGCA CTCCGTCGTC TGGAAACATC CGCGATTCGC
CGCATGGAGA GCGCCATGCA ACCTCTGGTG GTCGAAAGTG TCAGCGGTAC AGAAGTTGTC
GCTGCATCCG AGGAGCGGGG GGCTATGCAC CATGTGGCCC CATTGGACTC ATCGCCCGTT
TCTGTACCAG ATTCTTCCTC AGGAAAATCT TTCACCAACT CCACAAAAAC GATAACAGAT
CGCACCGAAT CCAAACCTCG TGCGACGACC GGTCATGAGA AGAGTTCCGC AAGTCGTTCG
AAAGGGCGGG GCCGCAAACC ACTTCCCCAG TCACTTTCTG TGAACGAAAG CGTCTGGGAA
ACTGCATCGA ACGAAACTGG ACGTTTTGCC AGTGACATGA CCGAATCGGA AGAACGACAG
TTACTGATAA AGGCCCTCGA ACAGTGCCAG GGGAATAAGG CCGAGGCGGC TCGAATGTTG
GGCTTGCCAC GAAGTACATA TTTCAGCAAG TTGAAGAAGT ATCGACTGGC CAATTAG
|
|---|
| Protein sequence | MSAARRWVRP VLAALGGCSL VYCMIALVYV ATAPDVRLRC LLVDKPLQPG KLTSIIIRKT
PGIEFKGPRP QPGDELLRIG EQRLGTSLDF FRYMDWLRTA PTPPGGRMLA GGDPLEQQLP
KLVQEEGGPR WVEIEFYRPE DDKVYVASLA VQGVPLDEIG LTLVWFLFQL AIFSVSAIAF
WRRPFDHPAQ LFFSMCLVTI SAFVGGFHWW VIAGNPWLNL PFAITAIMVP VVTFHFFLIY
PRPKPPIDRY SFETLVGIYA IPIAALVLFL LAEWSIWWLM ATTGISVEAR ALQMFGWLVA
LKNGVYIYVS IAAFYFAGII AALVHGFWTT RNPVERNQVK WILWAGLIAT LLIGYTLLLA
GVSRADFALG GGRWPMFFAS LVFMLAYAVG ISRFKLMLVD QVVSRGMLYY VLSFGTTLVV
SIAIAMTAVA AVSWREQLTS PQLVVVAAIL VVTVGMFLWA RDVWQRLVDR RFFREKYQLD
KVLQRMNRAV GQLADAESLA QRMAGSCQDV IQAERAAIYL REGRSTNFRL IAAEGVWPNV
SMQISTSADF VMTLAAATTL QAVPAASRDS MNPVQSFLRD LQAELIHALE VEGELSGFVV
LGPRQTNGVY SAEDITFLTA MGQITGVALH CAKVHKDLSR LNEELRLKVD RIEQQKQQIL
MLQAEINESQ EPESPAPVTE FNRGMIRGSS QALMEVLEVV RKAAASDSSV LITGESGTGK
ELLAQAIHAN SPRRDGPLVI VHCAALSTGL LESELFGHVK GSFTGAYADK PGRFELANGG
TLFLDEIGEI PLETQVKLLR VLQQRTFERV GSSETLRCDV RVVAATHKNL EQAIRDSRFR
EDLYYRLNVV HIALPALRER KDDLYELFRH FLKQAANKTG KRVFRIDESA LAALLAYQWP
GNIRELENVI ERAVVLSESN TVTLADLPPA LRRLETSAIR RMESAMQPLV VESVSGTEVV
AASEERGAMH HVAPLDSSPV SVPDSSSGKS FTNSTKTITD RTESKPRATT GHEKSSASRS
KGRGRKPLPQ SLSVNESVWE TASNETGRFA SDMTESEERQ LLIKALEQCQ GNKAEAARML
GLPRSTYFSK LKKYRLAN
|
|---|
| |