Gene Plim_0100 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlim_0100 
Symbol 
ID9136754 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePlanctomyces limnophilus DSM 3776 
KingdomBacteria 
Replicon accessionNC_014148 
Strand
Start bp134994 
End bp138575 
Gene Length3582 bp 
Protein Length1193 aa 
Translation table11 
GC content59% 
IMG OID 
Productprotein of unknown function DUF214 
Protein accessionYP_003628152 
Protein GI296120374 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCACGTT CTGGAGCAGC CTCGCTTCGC CATTCACTGT TGATCAAGGC CAGTCTCCGT 
TACTACTGGC GAACCTCGTT GGCCGTCTGG CTGGGCGTCA TTGCGGCGAC AGCCGTCGTG
ACGGGTGCAC TGCTGGTGGG TGACTCGATG CGTGGCAGTC TGCGGGCCAT GACGTTGCGC
CGGCTGGGTG AAGTCGATGC TGTCATCACT GGGCCCCGGT TTGTTCGAGA AGATCTCGCC
TCCCGATTGC AGGCGAAACT CAAAGATCAG GGCATCGAGA TCGCCCCAGG ACTGATCCTG
CGCGGAGGTG TTGAACATCA ACAATCGTCG AAATCCGGAA CTGACTCGCT CGTTCGCCGG
GCAGGGCAGG TGATGGCTTA TGGCGTCGAT GAACGGCTCT GGCCCTGGCT GGATCGATCT
GCACCCGGCA CCAGCATTTC GTCAGCAGCT TCGCGAGTGG CACCTCCTGC TGGGCGAGAA
GCTCTCATCA CCACGGCACT GGCTGAAGCA CTTCAGGCGA GGGCGGGAGA CACAATCACA
CTCTGGGTTG AACTTCCGTC GGCGGTTCCC CGCGATACTC TGCTGGGACA GAAAGACAAC
GATTCGCAGG AGGTCACGCT CACCGTTCGC GAGATTCTTC CTCAGGAGGT GACCCCAGCT
CACTTTGGAC TGGCACCCAG CCAGCTCGAT CCCGTCAACC TGTTCATGAA TCTCAAGACA
TTACAAGCGG ATCTGGGGTT GGGTGAAGTT CGGCCCAGCC GCCGGGATCC TCAAGGCTCG
CCGGCCCGAG TCAATGCGAT CTTTTTTCAT GACTCCAAAG CGACTTCTCC AGAGAGTGCC
TTGGCCTCAC AAGAAGACCG AGCCGCCGTT GAAGAGGCTT TGCGAAGTGT CATTTCCTTC
AGCGATCTGC AACTTCGGGT CATCGATGAT TCTGCGATTG GGGGGCTGAG TGTTGACAGC
GAGCGGATGC TGCTCGAAGA CCCGCTGGCC CAGGCCATTC AGTCAGCAGC CGACAAGCTG
AAGCTGGCCA GTTCGCCAGT CATGGTTTAC CTGGCGAACT CGATTCGAAA AGTGGGTGGG
GAACCCCGGC AGTACTCCAT GTACTCGACT GTCGCCGGGA TCAATGCGAA AGCGCTGGAA
CCACCTTTTG GCCCATTCCC TCTTGTCGAG CCTATGGCAG TCGTCGGTGG TCAACCCGTG
ACAGCGCTCA AGCTCTCCGG GCGTGGGGTG ATGATCAACA CTTATCTTGC AGAAGACCTG
GGCGCAAAAG TCGGCGACGA GCTAGAACTG AAATGGCATC AGGTTGGGGC ACATGGCGAG
CTTCCCGAAG AATCGGGACT GTTCACGGTC GAAGCCATCA CAAAGATCGA GGGGCCAGCC
GCTGACCGTC ATCTGACTCC TGAGGTCAAG GGGATTACCG ATGTCGATTC GCTGTCGGAT
TGGGATCAGC CTTTTCCGAT GAAGCTCGAT CTGGTGACGA CCCGTGATGA TGAGTACTGG
GATCAGTACA AGGCCCTGCC GAAACTCTTC CTGTCGCTCC AGACCGCCCA GGAACTCTGG
CCCAGCCGGT ACGGGACGCT GACATCGATT CGTCTGGCCT TGCCAACAGG CACTTCCCGC
GAAGCGATCG AAACAGAACT TGTTTCACAA ATGGTTGAGC AGCTCGATAT GTCGGCGGCG
GGCTTATCGC TCCAGCCACT CAAAGCCTAC GGTCTGAAAA CGGCAGCAGG AGCCACAGAT
TTTACCGGAC TGTTTATTGG CTTCAGCTTC TTCCTGATTG TGGCCGCCTT GATACTCATC
AGCCTGCTCT TCCGCCTCGG TGTCGAGCAG CGCACCCGCG AACTGGGTCT GCTGGCAGCC
ACGGGATTCA CACCCACATC GATCCGCTGG CTGCTGTTGT GCGAAGGCTT CTGGCTGGCA
TGCCTGGGTT CACTCATGGG CCTTGTGCTG GGAACCGCGT ATGCCCGGCT CATGATTTAC
GGTCTCACCA ACTGGTGGAA GGGGGCGATT CGCACCAGTG CCATTGACCT GTATGTCCTC
CCCGGCAGTC TCGTCATGGG AGCCGCGATT GCCATCGCCG GTGCGATGTT CAGCGTCTGG
TGGGCACTGC GCGATCTCTC CCGGATCGAG ATCCGGGACC TCCTTGCCGG ACAGAGCAAC
CTCTTCGAAG ATCAACCATC GAGGTATTCT CAGGCACGCT GGAAGGCCCT GACCAGTGGT
GGAATCTCGG CTGTGATGAT CGTCATGCTG GTTGCCGGGG TGGTTCCCGC CAGTGAAGCC
TTTGGCGGAT TATCGTGGCA GATCGTGGGA TTCTTCGTTT CCGGGATGTT ACTACTGGCG
ACCTCTCTCT GGACGCTCAG TGCGTGGCTG GATCGGCCTG TGATCAGTGT CCTCCAAGGG
AGTGGCTTGG CGGGGGTCAC CAGACTGGCA GAGCGAAATG TCACTCGAGC GAGGCAGCGC
AGTCTGCTCA CTGTCGGCAT GATCTCCGCG GCGACCTTTG TGATTGTGAC GGTGGCTGCG
GGGCAGAGAA ACCCTGCTGC CGACCGACCG ATGAAGTCGA GTGGGAATGG CGGCTTCGCT
CTCGTGGGAG AATCGGCCAG TCCGATCCTG TACGACTTGA ATACACCCGC AGGGAGGCAA
TCGCTCCAGC TCAAGTTCCC CGCAGGATCG AAAGAAGCCA GCCTGCTCGA TGCGATGCGG
GCTTATCAGT TCCGCGTGAA GCCGGGAGAA GATGCCAGTT GCATCAACCT GTTCCAGGCG
ACAGCCCCCA CGATTCTGGG TGTGCCGCGA TCATTCATCG AACGCGGGGG TTTTAAGTTT
GTCGGTGCGA GAGAAGCGAA TCCGTGGGAG CTACTGCTGG GCACCAGTAC CGAAACGATC
CCTGTGATTG GCGATATCAA CACTTTGCTC TATAGCCTCA AGAAAGGCCC CGGAGCCACG
CTTCCTGCAC CAGAAGCACC TTCTGGTGCG CCCCCTTTGA AGATCGCCGG GATGCTCGAT
GGATCTGTGC TGCAAGGTGT GCTACTGATG TCCGAGGAGA ACTTCCTGAG GCTCTATCCC
GAGCAGAAGG GATTTGGGTA CTTTCTCATC GAACTACCAC CAGCCGACGA ACAACCCGCG
ATCGATCTGC TGGAATCCCG TCTGGTAGAA TACGGTCTCG ACCTCGAACC GGTGGGTGTG
CGGATCGCCC GGTTTCTGGC TGTGCAGAAT ACTTATCTGG CCGCCTTCCA GGCTCTGGGT
GGCTTAGGAC TGCTGCTGGG AACCATCGGG CTGGCGACCG TCATGCTGAG AAATGTCTGG
GAGCGGCAAG CCGAGCTTTC GCTGATGAGA GCAATTGGTT TTGGCAACGG CCTGATCACC
CGCATGATTC TGTGCGAGAA TGCTCTGCTG CTGATCTGGG GGTTGTGCTT TGGAACGGTC
GCGGCTCTGG TCTCGATGCT GCCTCAACTG CTCTCCGCCG GGGCAGATGT CCCATGGGTC
ACAGGTGGCG TCTGGCTCCT GCTGGTCTTC GTGGTCGGAA TGCTTTCGGC CCTGGCTGCC
GTGCGACTGG CTGTACGCCT TCCTCTCCTC GTGAGAGCCT GA
 
Protein sequence
MSRSGAASLR HSLLIKASLR YYWRTSLAVW LGVIAATAVV TGALLVGDSM RGSLRAMTLR 
RLGEVDAVIT GPRFVREDLA SRLQAKLKDQ GIEIAPGLIL RGGVEHQQSS KSGTDSLVRR
AGQVMAYGVD ERLWPWLDRS APGTSISSAA SRVAPPAGRE ALITTALAEA LQARAGDTIT
LWVELPSAVP RDTLLGQKDN DSQEVTLTVR EILPQEVTPA HFGLAPSQLD PVNLFMNLKT
LQADLGLGEV RPSRRDPQGS PARVNAIFFH DSKATSPESA LASQEDRAAV EEALRSVISF
SDLQLRVIDD SAIGGLSVDS ERMLLEDPLA QAIQSAADKL KLASSPVMVY LANSIRKVGG
EPRQYSMYST VAGINAKALE PPFGPFPLVE PMAVVGGQPV TALKLSGRGV MINTYLAEDL
GAKVGDELEL KWHQVGAHGE LPEESGLFTV EAITKIEGPA ADRHLTPEVK GITDVDSLSD
WDQPFPMKLD LVTTRDDEYW DQYKALPKLF LSLQTAQELW PSRYGTLTSI RLALPTGTSR
EAIETELVSQ MVEQLDMSAA GLSLQPLKAY GLKTAAGATD FTGLFIGFSF FLIVAALILI
SLLFRLGVEQ RTRELGLLAA TGFTPTSIRW LLLCEGFWLA CLGSLMGLVL GTAYARLMIY
GLTNWWKGAI RTSAIDLYVL PGSLVMGAAI AIAGAMFSVW WALRDLSRIE IRDLLAGQSN
LFEDQPSRYS QARWKALTSG GISAVMIVML VAGVVPASEA FGGLSWQIVG FFVSGMLLLA
TSLWTLSAWL DRPVISVLQG SGLAGVTRLA ERNVTRARQR SLLTVGMISA ATFVIVTVAA
GQRNPAADRP MKSSGNGGFA LVGESASPIL YDLNTPAGRQ SLQLKFPAGS KEASLLDAMR
AYQFRVKPGE DASCINLFQA TAPTILGVPR SFIERGGFKF VGAREANPWE LLLGTSTETI
PVIGDINTLL YSLKKGPGAT LPAPEAPSGA PPLKIAGMLD GSVLQGVLLM SEENFLRLYP
EQKGFGYFLI ELPPADEQPA IDLLESRLVE YGLDLEPVGV RIARFLAVQN TYLAAFQALG
GLGLLLGTIG LATVMLRNVW ERQAELSLMR AIGFGNGLIT RMILCENALL LIWGLCFGTV
AALVSMLPQL LSAGADVPWV TGGVWLLLVF VVGMLSALAA VRLAVRLPLL VRA