| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_0023 |
|---|
| Symbol | |
|---|
| ID | 9136676 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | + |
|---|
| Start bp | 27971 |
|---|
| End bp | 31606 |
|---|
| Gene Length | 3636 bp |
|---|
| Protein Length | 1211 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | cytochrome c assembly protein |
|---|
| Protein accession | YP_003628075 |
|---|
| Protein GI | 296120297 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.182494 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACTG AATTTCTCCC CCGCACAGCC CTCAATGAAC TGAATGTTCC GGCCATTTCG
AAACCTGGCT TACTGGGCCT CGTTCGATCC GTCTTGATGC CTCTGGCTTC GTTGAAGTTG
ACAGTCGTGC TGTTCGCCAT GGCAATCTTT ATTGTGCTGG CGGGGACGCT GGCCCAGGTG
GAAGACGATA TCTGGGTGGT GATCCGTGAT TACTTCCGCA CGCCGATTGC ATGGATCAAG
TTTCAGATAT TCTTCCCCCC TTCGTTCTTT CCAGATATGC CCAAAATTCC GGGTGGTTTT
TACTTCCCGG GGGGGTGGCT GATTGGAACG ATCATGGCTA TCAACCTGCT GGCAGCTCAC
ACCGTTCGCT TCACCTTTCA GGCGAAGGGG CTGCGTCTTT TTTCCGGAAT CGGTGTGCTG
CTGGTGGGTG CAGCCATGAC CTGGGTCGTC ATTATCAGTG GTGATAATGC CAGTGGAATT
CTGCCCGAGA ATCAACAACT TTACGATCAA CTCTGGCTGT GCCTGAAGGT CAGTGTCTAT
GCTTCGTTTG TGCTGCTCTT TGCCTCTTTA TTCTGGGTGC CACTTTCAAA ACCTGTGACC
TGGGGATTGC TGGCAACAGG TCTGGCCATT TCAATCGCGG GCATCATCTG GTTGCTCTTT
CCAGGGAATA GCGAAACTCC CAGTCCCTCT TCGATGCGAA TTCTCTGGCA ATTGACCAAA
GGAGGTCTGG CGGGCGGATG CTTACTGGCT GGCTGTCTGC TGGCCTTCGG TCAGCGCGCG
GGGATTGTGC TGCTCCATGG TGGAATCGCC CTTCTGATGC TCAGTGAAGT CCTGGTAGGC
ACGCGAGCTG TCGAAGCTCA AATGTCGCTC TCGGAAGGAC AAACACAGAA CTTTGTACAG
GATGTGCGGA CTGTTGAACT GGCCATTTCG AACCCGCTCA ATGACAAAAG CGAATCGGTG
ACGGTCATTC CTAGCAATGT CCTGCTGGGA GAACCCTGGG GTTGGAAGCG CTATCTCCCC
GGCTTTCTGG GTGGTGGTTC AACAGGGGGA GCTCTTGATG AGACGTTGAC CGACCCCGCG
TTACCTTTCG GCATACGGAT TCACAAGTTT TACAACAATG CCCAGATTGT TGATCCCAAA
TCGTTTGCCA CAAATCCTGC GACGGCGGGC CATGGACTCA AAATTGGTGC CATAGCCGCT
GAGACTTCCA AGGGGACGGA TGCCGGTGGC AAAGTCGATA TGCCGGCGGC GTATATTGAG
CTGTTCAAGA ATGACGGGAC TTCGCTGGGA ACTTATCTGG TTTCAGCACT CCTGGCGGAA
TCGGGTGAAA TCGATTCTGT CGATATCGAT GGGAAAAAGT ATCAACTGGC ACTGAGGTTT
GAACGTCATT ACAAGCCTTA CTCGGTCACG CTCAAAGATG TGCGGCGTGA GCTCTATATC
GGTACCAGTA CACCGAAAGA CTTTTCTTCG GATCTCCATA TTTACGACCC TGCGCGACAT
GTCGATCGCG ATGTGAAGGT CTGGATGAAT AATCCGCTGC GATTTGCAGG GGATACGCTG
TATCAGACGG GTTATCACCA GAGTCCGCAA TCGGGGGCTG AGTTCTCCAC GATCTCGGTG
GTGGCGAATC AGGGCTGGAT GATTCCTTAT GTGAGCTGCA TGATCGTGGC GATTGGGATG
CTGGCCCAGT TTATGATCAC GCTCTTGCGG TTTCTCAATC GCATTCAGAA GCCTGAGCCA
GCTGCGATGA GCATAGCAGA GATCAGCGAT GATCCCCGTC GGCGACCTGC AAAGCGACCT
GTGGTTGAAG ACGAACCCAA GCCCAAGACG TGGGGAGTGT GGGGCTGGAT TCCAGCGGGA
GTCGCAGTGC TGGTCTTTGG AGGTTACATC GCTGGCCAGA GCATGCCGCG TTCGACACCT
TTCACAGAGT TTGATCTGGC CTCGTTCGGT GAACTCCCTG TCGTTTCGCA AGGACGTACC
AAACCATTCG ATACCCTGGC GAGAACATCA CTCCAGGTCT TGAGTGGTAA ATCGACCTAT
GCCGATGCCA ACGACAAGTC GCAACCGGCC ATCCGCTGGC TGCTTGATAT TATGGCGCAG
CCGCGAGTGG GTGGTGATCA CCGGGTGTTG CGGATCGAGA ACTTTGAACT GCTGGCACTT
TTGGGGCTGG AGCGTCGCCC TGGTTTTCGT TACAGCCCGA TGGAAGTGGC TGATAAGCTG
CCGGAACTGG CCCGTCAGGC AGATCTGGCT CGAGAAAAAC CTGCGACTGA GTTAACGGCT
TTTGAGAAGA AGCTGCTGCA GTTTGAGCGC CAGATTGGCC AACTCGATCT GCTGACTGCA
GCCTTTGGAT TGCCGCGGAT TGGTCAGGAG AACCCGGCTA ACGATCTGCG TGAAGCGATT
CGTCGTCAGC AGGCGCTGGA AGTTCGTCAT CCACCACTGG CAGTCCCACC GGCTGCAGAT
GAAGACAAAT GGCAGACATT TGCTTCCGCC TGGACGATGG GCATTATTCG TTCGGTTCTT
TCTCGCGAAG AACAGGACAG CCAGGCACTG TCTTATCTGG TCACGATCTA CTCCTCGTGG
GCAGCCAATA AACCTCAGGA ATTTAATAAA GCGGTTGCAG ATTATCGGGA GTGGCTGGCG
ACACAGAACC TCAAAGATGT TTCGCTGACA AAGTTACGTT TTGAAGCCTA TTTCAACCGG
GTCGACTGGT TTACTCAGGC GGCTGTGGTG TACTTGGCGG GATTCGTGCT GGCCATGCTC
TCGTGGCTCT TCTGGCAGAA GCCACTCGGG AGAGCCGCAC TGGCGCTGCT GATTCTGGGC
GTCATTGTGC ATACGTTGGC GCTGGCAGGC CGGATGTATA TTTCGGGACG ACCACCCGTA
ACCAATCTGT ATTCTTCGGC GGTCTTCATT GGCTGGGCCA GTGTACTGCT GGGGATTTTG
CTGGAGGCGA TCTATCGCAA TGGGATTGGC AATGTGATTG GAGCGACCGC TGGATATGCC
ACACTCCTGA TTGCCTGGGG TCTGGCGGCT GATGGGGATA CGTTCGATGT GCTGCAGGCC
GTGCTGGATA CACAGTTCTG GCTGGCGACA CATGTGACGT GTATCACGCT GGGCTATGCG
ACCACTTACA TCGCGGGGCT CCTGGGGCTG ATCTATCTGG TGCGTGGCGT GCTGACGCCT
TCGCTGACTC CAAACATGCA CCGCGAGCTT TATCGTATGA CCTATGGCGT GTTGTGTTTC
TCAATTTTCT TCAGTTTTGT CGGGACGGTG CTCGGCGGAC TGTGGGCGGA CGATTCGTGG
GGCCGCTTCT GGGGATGGGA TCCGAAAGAA AACGGCGCCC TGATGATTGT GCTGTGGAAT
GCACTGGCAT TGCACGCCCG CTGGGGAGGC CTCGTGAAAG AACGAGGGCT GGCAGTCCTG
GCTGTGATGG GGAACATCGT CGTGAGCTGG TCGTGGTTTG GCGTGAACGA ACTGGGTGTC
GGGCTGCATT CTTATGGGTT CAAAGAAGGA ACCCTCTTCT GGCTGGGCCT GTTCGTCCTT
TCGCAATTGG TCGTTGTGAT GCTGGGGCTG GTTCCTAAAG GGTTCTGGTG GAGTGCCCGG
AGACATCCGG AACTGCTGAG TTATTACGAC CGTTAA
|
|---|
| Protein sequence | MATEFLPRTA LNELNVPAIS KPGLLGLVRS VLMPLASLKL TVVLFAMAIF IVLAGTLAQV
EDDIWVVIRD YFRTPIAWIK FQIFFPPSFF PDMPKIPGGF YFPGGWLIGT IMAINLLAAH
TVRFTFQAKG LRLFSGIGVL LVGAAMTWVV IISGDNASGI LPENQQLYDQ LWLCLKVSVY
ASFVLLFASL FWVPLSKPVT WGLLATGLAI SIAGIIWLLF PGNSETPSPS SMRILWQLTK
GGLAGGCLLA GCLLAFGQRA GIVLLHGGIA LLMLSEVLVG TRAVEAQMSL SEGQTQNFVQ
DVRTVELAIS NPLNDKSESV TVIPSNVLLG EPWGWKRYLP GFLGGGSTGG ALDETLTDPA
LPFGIRIHKF YNNAQIVDPK SFATNPATAG HGLKIGAIAA ETSKGTDAGG KVDMPAAYIE
LFKNDGTSLG TYLVSALLAE SGEIDSVDID GKKYQLALRF ERHYKPYSVT LKDVRRELYI
GTSTPKDFSS DLHIYDPARH VDRDVKVWMN NPLRFAGDTL YQTGYHQSPQ SGAEFSTISV
VANQGWMIPY VSCMIVAIGM LAQFMITLLR FLNRIQKPEP AAMSIAEISD DPRRRPAKRP
VVEDEPKPKT WGVWGWIPAG VAVLVFGGYI AGQSMPRSTP FTEFDLASFG ELPVVSQGRT
KPFDTLARTS LQVLSGKSTY ADANDKSQPA IRWLLDIMAQ PRVGGDHRVL RIENFELLAL
LGLERRPGFR YSPMEVADKL PELARQADLA REKPATELTA FEKKLLQFER QIGQLDLLTA
AFGLPRIGQE NPANDLREAI RRQQALEVRH PPLAVPPAAD EDKWQTFASA WTMGIIRSVL
SREEQDSQAL SYLVTIYSSW AANKPQEFNK AVADYREWLA TQNLKDVSLT KLRFEAYFNR
VDWFTQAAVV YLAGFVLAML SWLFWQKPLG RAALALLILG VIVHTLALAG RMYISGRPPV
TNLYSSAVFI GWASVLLGIL LEAIYRNGIG NVIGATAGYA TLLIAWGLAA DGDTFDVLQA
VLDTQFWLAT HVTCITLGYA TTYIAGLLGL IYLVRGVLTP SLTPNMHREL YRMTYGVLCF
SIFFSFVGTV LGGLWADDSW GRFWGWDPKE NGALMIVLWN ALALHARWGG LVKERGLAVL
AVMGNIVVSW SWFGVNELGV GLHSYGFKEG TLFWLGLFVL SQLVVVMLGL VPKGFWWSAR
RHPELLSYYD R
|
|---|
| |