Gene Ava_D0022 details

Gene Information

• Locus tag: Ava_D0022
• ID: 8952409
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Anabaena variabilis ATCC 29413
• Kingdom: Bacteria
• Replicon accession: NC_014000
• Strand: +
• Start bp: 16459
• End bp: 17181
• Gene Length: 723 bp
• Protein Length: 240 aa
• Translation table: 11
• GC content: 45%
• Product: Sigma-70 region 2
• Protein accession: YP_003541145
• Protein GI: 292905274

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCACTG AATTATTTAG AGAGTACCGA AACAATCCCA CACGGCAACT GCGCGATCGC 
ATTTTCAACC ACCATTACAA ACTGGCCTGC GAGATTGCCC ATCAATATAG AATCTGTTGT 
GATGAACCAC TAGAAGATTT AATTCAGTTG GCGGGGGTAG GAATGTTGAC AGCCATTGAG 
CGCTTTGACC CAAGCCGAAG CAATGCTTTT AGTTCATTTG CTTGCCCGTA CATCAAAGGG 
GAGATCCGGC ATTACCTGAG AGACAAAGCC AGTACTGTGA AGATTCCGCG ATCGCTTCAG 
AGTTTGTACC AGCGAGGCAA GAAGCTGCAT GGAACCGATG AGCAAATTGC AAAAGCTCTA 
GGCTGCACCC AACAGCAATG GAAAGAAGCC AAAGCCATAG GGGTTAATCG CAATTTGTTT 
AACATCGATA ACTTGCTTAC TCTCACACTG GAATGGAGCG AAGGGTGCGG AGGTTCTGAC 
ACAGTAAGTA TGAAACGGTT TTTGTCGGCA TTATCATTTC AAGAACAACC GGTTAAACCT 
ATTGCCACCA CCATAGAACC GTCTTCGTTA AGCCAGTTAG ATGAAGCTAA TCAACAGTTG 
ATCGAGATGT TCTTCTTCCA GAATGAACCG CTTAAAGAAG TGAAGAGGAC AGCGATCGCA 
TCTGGTAAAG GCAAAGATGT TAAAACCTTA TTGGTAAATG CAGTCTTAAT GATCAACGGG 
TAG 

 

Protein sequence

MTTELFREYR NNPTRQLRDR IFNHHYKLAC EIAHQYRICC DEPLEDLIQL AGVGMLTAIE 
RFDPSRSNAF SSFACPYIKG EIRHYLRDKA STVKIPRSLQ SLYQRGKKLH GTDEQIAKAL 
GCTQQQWKEA KAIGVNRNLF NIDNLLTLTL EWSEGCGGSD TVSMKRFLSA LSFQEQPVKP 
IATTIEPSSL SQLDEANQQL IEMFFFQNEP LKEVKRTAIA SGKGKDVKTL LVNAVLMING