Gene Snas_5868 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSnas_5868 
Symbol 
ID8887084 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStackebrandtia nassauensis DSM 44728 
KingdomBacteria 
Replicon accessionNC_013947 
Strand
Start bp6228992 
End bp6229654 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content69% 
IMG OID 
Producttype II secretion system protein 
Protein accessionYP_003514590 
Protein GI291303312 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0188424 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.16235 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCCAC GAACCCGCCT GCGCGCCCTG ACCCGCCCCG CGAACCCATC GGCTGTCCCA 
ACCCGCGACC GTCGAATCTG GATCGCCATC GCCACCGGAA TCCTGACAGC CCTCACCATC
GGCAACCACT ATGGACTACT CGTCGGCGCC GTCACCACCA TCGTTGTCCA TCTGGCCCTA
CGCCGCATGG AACCCGCCGC CACCCGCCGA GCCCGCGAAC GCGACCGAGC CGACCTGCCA
TTCGCGCTCG ACGTCTTCGC CGCCTGCCTC CACAGCGGCG CCCCGCTCGA CCGCGCTCTG
TCGACCTGCG CCGAAGCCGT CAACCCGGCC CTCGCCAACC GCTTCCGTCG CGCCGCCCGC
AGCCTCACCC TCGGGGCCAC CCTCGCCGAA GCACTGACCG AATTCGACAG TCTGGCCGAC
GGTCACCGCC TCGTCCAGAC CATTGGCCGC AGCGCCGACA CCGGAGCCCG CTTGGCCGAC
AGCCTCCATC TGCTGGCCAA GGAGCTGCGC TTCGACCGTG AGCAAGCGGC ACTGTCCCAT
GCCCACCGAG CTGGAGTGTG GATGGTGCTC CCGCTGTGCC TGTGCTTCTT GCCCGCCTTC
ATCGCCGCCG GACTCCTACC GGTGGTGATC TCCAGCCTCG ACGGAATCCT CAACACCTAC
TGA
 
Protein sequence
MKPRTRLRAL TRPANPSAVP TRDRRIWIAI ATGILTALTI GNHYGLLVGA VTTIVVHLAL 
RRMEPAATRR ARERDRADLP FALDVFAACL HSGAPLDRAL STCAEAVNPA LANRFRRAAR
SLTLGATLAE ALTEFDSLAD GHRLVQTIGR SADTGARLAD SLHLLAKELR FDREQAALSH
AHRAGVWMVL PLCLCFLPAF IAAGLLPVVI SSLDGILNTY