Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Snas_5868 |
Symbol | |
ID | 8887084 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Stackebrandtia nassauensis DSM 44728 |
Kingdom | Bacteria |
Replicon accession | NC_013947 |
Strand | - |
Start bp | 6228992 |
End bp | 6229654 |
Gene Length | 663 bp |
Protein Length | 220 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | |
Product | type II secretion system protein |
Protein accession | YP_003514590 |
Protein GI | 291303312 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0188424 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.16235 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAGCCAC GAACCCGCCT GCGCGCCCTG ACCCGCCCCG CGAACCCATC GGCTGTCCCA ACCCGCGACC GTCGAATCTG GATCGCCATC GCCACCGGAA TCCTGACAGC CCTCACCATC GGCAACCACT ATGGACTACT CGTCGGCGCC GTCACCACCA TCGTTGTCCA TCTGGCCCTA CGCCGCATGG AACCCGCCGC CACCCGCCGA GCCCGCGAAC GCGACCGAGC CGACCTGCCA TTCGCGCTCG ACGTCTTCGC CGCCTGCCTC CACAGCGGCG CCCCGCTCGA CCGCGCTCTG TCGACCTGCG CCGAAGCCGT CAACCCGGCC CTCGCCAACC GCTTCCGTCG CGCCGCCCGC AGCCTCACCC TCGGGGCCAC CCTCGCCGAA GCACTGACCG AATTCGACAG TCTGGCCGAC GGTCACCGCC TCGTCCAGAC CATTGGCCGC AGCGCCGACA CCGGAGCCCG CTTGGCCGAC AGCCTCCATC TGCTGGCCAA GGAGCTGCGC TTCGACCGTG AGCAAGCGGC ACTGTCCCAT GCCCACCGAG CTGGAGTGTG GATGGTGCTC CCGCTGTGCC TGTGCTTCTT GCCCGCCTTC ATCGCCGCCG GACTCCTACC GGTGGTGATC TCCAGCCTCG ACGGAATCCT CAACACCTAC TGA
|
Protein sequence | MKPRTRLRAL TRPANPSAVP TRDRRIWIAI ATGILTALTI GNHYGLLVGA VTTIVVHLAL RRMEPAATRR ARERDRADLP FALDVFAACL HSGAPLDRAL STCAEAVNPA LANRFRRAAR SLTLGATLAE ALTEFDSLAD GHRLVQTIGR SADTGARLAD SLHLLAKELR FDREQAALSH AHRAGVWMVL PLCLCFLPAF IAAGLLPVVI SSLDGILNTY
|
| |