Gene Snas_5863 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSnas_5863 
Symbol 
ID8887079 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStackebrandtia nassauensis DSM 44728 
KingdomBacteria 
Replicon accessionNC_013947 
Strand- 
Start bp6226431 
End bp6226991 
Gene Length561 bp 
Protein Length186 aa 
Translation table11 
GC content70% 
IMG OID 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003514585 
Protein GI291303307 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.602897 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.34108 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCCCGA GAGCCGACGC CGCGCGAAAC ACCGAACTGC TGTTGTCGGC GGCGAAGGAG 
CTGGTCGAGG AGTATGGACC GGAGGTCGCG CTGGATCAGA TCGCGCGCCG GGCCGGGGTC 
GGCAACGCCA CCCTCTACCG GCATTTCCCG ACCCGCGCCG ACCTGCTCAT CGCCGTCTAC 
GAGGACGAGG TGACGGCGCT GTGCGACCAC GGCGAGGAAC TGTTGACCTC GGCTTCGGCC 
AGTCAGGCGC TGTTCACCTG GCTGGAGAGC CTGGCGACCC ACACCGCCGC CAAGCGGACC 
CTCGCCCTGT CCGCTTCGGA GCGACAGCCC GAGCGGCGAA CCGCGCTGTT CGATCGTTGG 
CACGGGTCGA TCCGGTCGGT CACCGAGCGC CTGCTGGACC GGGCGACAGC TGCGGGGGTC 
GTGCGGGGGG ACATCGATCT GACGGACCTG TTGGTGCTGA CCAGTGCCTC CGCCTCGGCC 
GCGGGTGGGG CCGAGCAGGT GCATCGGCTG GTGCGGATCA TCTGCGACGG ATTGCGGCCG 
CACCGGGAGA CGGATGCGTA G
 
Protein sequence
MAPRADAARN TELLLSAAKE LVEEYGPEVA LDQIARRAGV GNATLYRHFP TRADLLIAVY 
EDEVTALCDH GEELLTSASA SQALFTWLES LATHTAAKRT LALSASERQP ERRTALFDRW 
HGSIRSVTER LLDRATAAGV VRGDIDLTDL LVLTSASASA AGGAEQVHRL VRIICDGLRP 
HRETDA