Gene Snas_5621 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSnas_5621 
Symbol 
ID8886836 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStackebrandtia nassauensis DSM 44728 
KingdomBacteria 
Replicon accessionNC_013947 
Strand
Start bp5976955 
End bp5977542 
Gene Length588 bp 
Protein Length195 aa 
Translation table11 
GC content68% 
IMG OID 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003514344 
Protein GI291303066 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.00254336 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGGAAATC GCGAGCAACT TCTGGACGCG GCGAAGCAGT GTCTGATTCA GAAGGGCTAT 
GAGCGCACCA CCGTGCGCGA CATCTCGGAC CTTGCGGGCG TCAGCAAGGC GGCCATCGGC
TACCACTTCG GATCGAAGGA GGCGCTGTTG AACGCGGCCC TGTTCGAGGT GCTCGGCGGC
GGGGACTCGG GCTTGTCGCC GACGGCCGAG GCGGCCGACC CGGACGCGAC GCCCGTCCAG
CGGTTCACGG CACTGTGGAC GAACATGATG GCGGCCTACG GCGGAGAGGA CAAGACCTTC
TGGGCCGCGA ACCTGGAGTC GGTGCTGGTG GCCTATCGGG ACGCGTCGGT GCGCGAGCAC
CTGTCCGCGG GCTTCGAGGA GGGGCGCAGC GGCATCACGT CGGTGCTGAC CGGCGTCGAG
GAGTCGCAGG TGCCGCCCGA GACGATCCGC ACCCTCGGTT CGGTGCAGAT GGCGCTGTTG
AGCGGCGTGA TGATCCAGTA CCTGGTCAAC CCGGACACGG CGCCGTCGGC CGAGGAGTTG
TTCCGGGGGA TCCACGCGCT GGCGCGCATC ACCCCCGACA CCGAGTGA
 
Protein sequence
MGNREQLLDA AKQCLIQKGY ERTTVRDISD LAGVSKAAIG YHFGSKEALL NAALFEVLGG 
GDSGLSPTAE AADPDATPVQ RFTALWTNMM AAYGGEDKTF WAANLESVLV AYRDASVREH
LSAGFEEGRS GITSVLTGVE ESQVPPETIR TLGSVQMALL SGVMIQYLVN PDTAPSAEEL
FRGIHALARI TPDTE