| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Snas_5616 |
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| Symbol | |
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| ID | 8886831 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Stackebrandtia nassauensis DSM 44728 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013947 |
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| Strand | + |
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| Start bp | 5969141 |
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| End bp | 5972434 |
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| Gene Length | 3294 bp |
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| Protein Length | 1097 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | |
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| Product | transcriptional regulator, winged helix family |
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| Protein accession | YP_003514339 |
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| Protein GI | 291303061 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00878101 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0410106 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCGCATCA ACCTGCTGGG ACCCTTCGAG GTCCTCGACG CCGACGGCCG CACCGTCGAC
GTCGGCGGCC CCCGGGTGCG CGCACTGGCC GCCCGTCTCG CCCTCGCCGA CGGCCGTACC
GTCTCCGCCG CACTGCTGAT CGACGACCTG TGGGGCGACA ACCCGCCCGC CGGAGCCAGC
GGCACCCTGC ACCGGCTCGT CTCCCGGCTG CGGAGTGCGT TGCCGGACAC CGGAACGGGC
CACCCCCTGC GCTCCGAACC CGGCGGCTAC CGACTGGAGG CCACGGTCGA CGCCCGCCGC
TTCGAGGACC TCGCGGCGTC CGGACGCCAA GCACTCGCCG ACACCGACCC CGCCACAGCG
GCCCGGCTAC TGCGCGATGC CGAACGACTC TGGCGCGGCC CCGCGCTCGG CGGCCTGGGC
GAAGCCCCGT ACCTGACCGG CGCCACCGCC CGACTGTCGG ACCTGCGACT GCGGGTCTCG
GAGCATCGGT TCGAGGCCGA ACTCGCCCTG GGGCGACACG CCGCCGTCGC CACCGAGGTC
GAACAGCTGG CGGCGAACCA CCCGCTGCGG GAACGCTTGC AGGGCTTGCT GATGCGGGTG
CGATACGCCA CCGGACGGCA AGCCGAGGCG CTGGCCGTCT TCGAGCGGGT CCGCGCCGAA
CTGGCGGACC GGCTGGGAGC GGACCCGTCG CCGGAGCTGG CCGCTGTCCA CGTCGCGGTG
CTTCGCCAGG ACCCCGACCT GGCCCCGAAC CCACCCCACC CGACGCCGTC GGCCGCGCTG
ACGAGCTTCG TCGGCCGCGA GTCCGAACTA GACCAACTGC GTTCGCTGCT CGGCCGCGAG
CGACTGGTGA CGATCCTCGG CCCCGGCGGA GCGGGCAAGA CCCGACTGGC CCGCGAGCTG
CTCGTCCAGC TGTCCCCGGA CGGCGGCGAA ACCCGCTTCG TTGAACTGTC CATGGTCGAC
GGTACTGCGG GGCTGATCCC CGCGATCCTG GACAGCCTCG GCACCCGCTC GCCGTTCCCG
GGCGGCCCGG CCGATACCGA CGGCCACAGC CGACGTGACT CGGGCGCCGG TGAGTCCATT
ACCGCCGACT CGCCCACCGA GTTCGAAGCG CTCACCGCCA CACTGCACGG CCGCGCGCTG
CTTCTGGTCC TCGACAACTG CGAACACCTC GCCACCGACG TCGCCATCCT CGTCGAGCGA
CTGCTCGACA CCAACCCCCG GCTACGGATC CTGTGCACCG GTCGGCAACC GCTGGACATC
GCGGGCGAGC AACGCTTCCC CTTGCCGCCG TTGGGTTTGC CAAACTCAGA CCGACCCACC
ACCGAAGCCG CCGCCGTCCG GCTGTTCGCC GACCGCGCCG CGAAGGTGCG CCCCGGCTTC
ACCGTCACCG ACGCCAACGC CGAAACCGTC GCGGAGATCT GCCGCCGCCT CGACGGTCTG
CCGCTGGCCA TCGAACTGGC CGCCGCCCGG ACCCGCATCA TGACGCCGTC CCAGCTCGCC
CACCGTCTCG ACGACCGGTT CCAGCTGCTG ACCGGCGGCG TTCGCACCGC CGATGCCCGG
CACCAGACGC TGCGAGCCGT CGTGGAGTGG AGCTGGGATC TGCTGGACGA GCCGGAGCGG
CGGTTGGCGC GGCGGTTCTC GGTATTCGCG GGTGGGGCCA CGCTGGCCGC CGTCGAGGCT
GTCTGCGGTG GACCGGATCT GCCCGCCGAC CGGATCCTCG ACGTCGTCGC CGCTCTTGCC
GACAAGTCGC TGCTCGAAGC CACCGACACC GACGGTCCCG AGCCGCGCTT TCGCATGCTG
GACACCATCC GCGCCTTCGC CACCGATCAG CTAGCCGAGG CGGGCGAGAG GTCCGGCCCC
GGCCATGCCG CCGCCCCTGA CGGCCCCGCC AGCCCGCACC CCACCGAAGC CACCGCCACC
CGCACCAAGC ACGCCCACTA CTTCCGCCAA CTCGCCGAGC ACGCCGATCC CCAACTACGT
GGCCCCGACC AGCCCACGGC CCTGGCCATG TTCCAAGCCG AGCAGCCAAA CCTGTCGTCC
GCCTTGCGAT GGGCCCTCAG CACCGCCGAC ACTGAACTCG CGCTGCGACT GGCCGCCTCC
CAAGTCTGGT ACCGACTGCT ACGCGGCTCC CGATACGACA CCGCCATCAC CGACGACGTC
CTCAACCTGC CCGGCGACGA CTTCCCCACC GAACGCTCCA CAGTCGCCAC CGCGCTCGCC
ATGGCGGGCG TCGGCTTCGC CGGAGTCGAC GTCCCCGTCG CACAGCGAGC CCTGACCGTC
GCACGCCACC ACATCGACCA AGCCGACCGC TCCCGACACC CGCTGCTGTC CCTGTGGGAA
CCGCTGCTCG CCTTGCACGA CAAAGACCTG CACGGCACCC GCCTCGAACT CGAAAAGCTG
CTGAACCCGA ACGACGCGTG GACCCAAGCC ACCGCGTCGC TGTTCCTCGG CTTCGTCCAC
AACCTCGACG GCGACACCTC GACCGCCCGC CACCATCTGG AGCAAGCCGC CGACCACTTC
GAACGCCTGG GTGACCGCTG GGGCCGGTTC CTCACCGCGC AGGCCCTAGC CCCGATACGT
TCCCTCAACG GCGATCCCAC CTCCGCCGCG ACCACCTACC GTGAAGCACT CGCCCACCTC
ACAGCACTGG GCACCACCGA AGACGTCCCG ATGCTACTGG CCCAAGTGGG CCACGAACTA
CTGCGCGCCA ACGACACCAA CGCCGCCCGC TCCGAACTGG AGTCCGCGCT GCGACTCGCC
GACCGCCACG GCAACCGCGA GGCCCGAATC TGGAGCCACT GCGGCCTAGG CGATCTCGCC
GTCGCAACCG CCAACCTCCC CGAAGCCGAA CACCACTACC GGCTCGCCCG GGAAGCGATA
GCCGCCGACT CTCCCACCCG CCGACTCATA CCCGTCATCG AAAGCCGCAC CGCCCGACTC
CTGCACGCCA ACGGATCCCC AGTAGCGGCA AGGTCCCGAC TCCAGACCGC CATCACCGCA
GCCCTCGCCG CCGACGACCT GCCGAGCCTC GCCTACGCCG CCAACACCCT CGCCGAAATC
GTCCTGGCCG ACGGCGATCC CGCCACCGCC GCCGAAATCC TCGGCCTGGC CGAAACCATC
CGCGGCGCCC CCGACCAAGG CGACCCCAAC GTCGCCCGCA CCACCACTGC GGCCCGTACC
GCTCTCGGCA CCGCTGACTT CACCACCGCT CACCAGCACG GCGCACACCG TACCCGCGCC
GAGTCCCTGA AGCGACTGAC CGACCTCGCC GAACAGACCC CCGCCTCCGG CTGA
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| Protein sequence | MRINLLGPFE VLDADGRTVD VGGPRVRALA ARLALADGRT VSAALLIDDL WGDNPPAGAS
GTLHRLVSRL RSALPDTGTG HPLRSEPGGY RLEATVDARR FEDLAASGRQ ALADTDPATA
ARLLRDAERL WRGPALGGLG EAPYLTGATA RLSDLRLRVS EHRFEAELAL GRHAAVATEV
EQLAANHPLR ERLQGLLMRV RYATGRQAEA LAVFERVRAE LADRLGADPS PELAAVHVAV
LRQDPDLAPN PPHPTPSAAL TSFVGRESEL DQLRSLLGRE RLVTILGPGG AGKTRLAREL
LVQLSPDGGE TRFVELSMVD GTAGLIPAIL DSLGTRSPFP GGPADTDGHS RRDSGAGESI
TADSPTEFEA LTATLHGRAL LLVLDNCEHL ATDVAILVER LLDTNPRLRI LCTGRQPLDI
AGEQRFPLPP LGLPNSDRPT TEAAAVRLFA DRAAKVRPGF TVTDANAETV AEICRRLDGL
PLAIELAAAR TRIMTPSQLA HRLDDRFQLL TGGVRTADAR HQTLRAVVEW SWDLLDEPER
RLARRFSVFA GGATLAAVEA VCGGPDLPAD RILDVVAALA DKSLLEATDT DGPEPRFRML
DTIRAFATDQ LAEAGERSGP GHAAAPDGPA SPHPTEATAT RTKHAHYFRQ LAEHADPQLR
GPDQPTALAM FQAEQPNLSS ALRWALSTAD TELALRLAAS QVWYRLLRGS RYDTAITDDV
LNLPGDDFPT ERSTVATALA MAGVGFAGVD VPVAQRALTV ARHHIDQADR SRHPLLSLWE
PLLALHDKDL HGTRLELEKL LNPNDAWTQA TASLFLGFVH NLDGDTSTAR HHLEQAADHF
ERLGDRWGRF LTAQALAPIR SLNGDPTSAA TTYREALAHL TALGTTEDVP MLLAQVGHEL
LRANDTNAAR SELESALRLA DRHGNREARI WSHCGLGDLA VATANLPEAE HHYRLAREAI
AADSPTRRLI PVIESRTARL LHANGSPVAA RSRLQTAITA ALAADDLPSL AYAANTLAEI
VLADGDPATA AEILGLAETI RGAPDQGDPN VARTTTAART ALGTADFTTA HQHGAHRTRA
ESLKRLTDLA EQTPASG
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