| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Snas_5531 |
|---|
| Symbol | |
|---|
| ID | 8886745 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stackebrandtia nassauensis DSM 44728 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013947 |
|---|
| Strand | + |
|---|
| Start bp | 5876920 |
|---|
| End bp | 5879811 |
|---|
| Gene Length | 2892 bp |
|---|
| Protein Length | 963 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | |
|---|
| Product | transcriptional regulator, SARP family |
|---|
| Protein accession | YP_003514255 |
|---|
| Protein GI | 291302977 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.394906 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAATTT CCGTGACCGC CCCGTTGCGT TTTCAACTGC TGGGACCGGT CCGCGCCTGG
CGGGACGGTG AGGAACTTCG ACTCGGTTCG CCGCAGCAGC GGCTGGTGCT CGTCCGGCTG
CTGATCGGCG AGGGCCGTCC GGTGTCCATC GACCAGCTTT CCGCCACTCT GTGGCGCGAC
GATCCGCCGC CCGCGGCCCG CAGCACGGTG CGCACCTACC TGTCCCGGCT GCGTTCGGTA
CTGGGCGCGG GGATCATCGA CTCCCGCGAG CACTGGTATT CGCTGCGGGT CGGCGAGGTG
GACGCGTGGC GGTTCGCCGC GCTGCTGCGC GAGGCCGAGG CCACCCCGGA CCGCGACCGG
GCCCGGCGGC TGTTGAGCCA GGCTCTCGAC CTGTGCCAGG ACATCCCGCT GGCCGAGCTG
CCGGGCGAAT GGGCACGCGC GCAACGCATT CGGCTCGAGG AGGAACGCGA CCGGGCCGTG
GAACGACGGG CCCGCCTCGA CCTGGACTTC GGACGGCCCG CCGACGCCGC CGCCGCGCTG
GCACGGTTGT GCGCCGAGTA TCCGCTGCGG GAGCGGCCGC ATCAGCTGCT GATGCTCGCG
CTGTACCGGG ACGGCCGCAA GGCCGAGGCG CTGACCGTCC ACAACGACCT GCGCCGCCGG
CTCGCCGAGC AGCTGGGCAT CGATCCCGGC GACGAGACCG CCGAGCTGCA CCGGCGGATA
CTGCGGGCCG ACCCGGAACT GGCGGCACCC CCACCGATCG CGGCCCCCGA CGCCGAACCG
CCGCGTCGCG GCCCGGCCCA GCTGCTGGCC GACATTCCCG ACTTCACCGG CCGCGACGAC
GTCGTCAGGG AACTGACCGC GCTGCTCACC GAGGAACGCG ACGCGGCCCC GGTCGTGGTC
GTCACGGGCA TCGGCGGCGC CGGTAAGACC ACATTGGCCA CTCACGTCGG CCATCGGGTG
GCCGCCGACT TCCCCGACGG TCAGCTGTAC GTCGACCTGC GCGGCGCCGA CGAGGTTCCG
CATGAGCCGC TGGCGGCCCA GCGGGGCATG CTGCGGTCGC TGGGCGTCAG CACCGAGGAC
ATCCCGGCCG CCGAGGACGA ATGCGCCGCG CTCTTCAGGT CCACTATGGC CAGCAAACGG
TTGTTGTTGT TGCTGGACAA CGCCGCCGAC ACCGCGCAGG TCCGGGCGCT GCTGCCCGGT
GCGGCCGGGT GCGCGGCGAT CGTCACCGCG CGGTCCACGC TCACCGGTCT CACCGGCGCG
CGTTACGTCC GCCTGTCCGC CCTGGAACCC GGCGAGGCGG TGACGTTGCT GCGGCGGGTG
GTGGGCACCG AACGCGTCGA CGCCGAGTCC GCCGAGGCGC TGAACGTGGT GACCGCCTGC
GGTTCGCTGC CGCTGGCCGT GCGGATCGCC GCCGCGCGCC TGGTCGCCAG ACCGCAGTGG
ACGGTCGGGC AGTTCGCCGA GCGGGTGCGC GACGAACAGC GGCGGCTGGC CGAACTGCGG
GCCGGTGACC TGGCGGTCGA AGCGGCCTTC GCGCTCAGCT ACCGGCAACT GGACGAGCAG
CACGCGCACG CGTTCCGGCT GTTGACCGTC CCGGACGCCC CCGAACTGGC GCTGGCCACG
GCAGCGGCGG TGCTGGGACG CGGCGAACTC GACACCGAGG GCCTCGCCGA GGACCTCGTC
GACCTGAACC TGCTGGAATC CCCCGCCTAC CGGCGCTACC GGATGCACGA CCTGACCCGG
CTGTTCGGAC GCGGCAAGAC CGATGCGGCC GAACGCGACG CGGCGCTGCG CCGACTCGCC
GACTACTACG TGGCCACCGC CTACAACGGA CGCCGGGCGG TCGAGTCCGA CGGCCGTGTC
ATCAACGGGG TGCTGCCCAC CGCATCGGAA GGCACCGGCT TCGCGTCGGC GGCCGAGGCG
GAACGCTGGC TCGACACCGA GACCGACGCG CTGCTGCTCA CCCTGCGGCA ACTCGCCCGA
CAGCTGCCTG CCGCCGTCCG GCTCGCGGGC GATCTGCTGC GCGTCATCGC CAACGTGCAC
ATCATCTCCA GCCCAAGACG CGGCGACCTG TTCGCCGCCG CCGGGGCGAT AGCGGCGGCG
GCCCGGACGC ACGGGGACGC GTTCACCGAG GGGCGGGCCC TGCTGCAACA GGCGGACTGC
CACCTGGCGG AGGCGCGCTT CACCGAGGCG AAAGCGCTGG CGACCACCGC CCTGGAGCTG
GCCGAGCGAA GCGGCGACGG CTACGGCCAC GCCTCGTCCC AGGCCTGCCT CGGCGTGACC
GCCTTCTACG CCGACGACGA TCCGGAGGCG GCGGTCAAGC TGTTCTCGGC CGCCTATGAG
GGTTTCAGCG CCCTGTCGGT CGGGGCCGAG GCCGGAAAAC TGCTGGCGAC CCGGGCCCGG
ATCCTGTTGC GGCTGGGGCG CCGGACCGAG GCGGTCGCCG ACGCCGTCGA GGCCGTCGCG
CGGCTGCGCG AGCACGGTGT CGGCACCGCC CTGGCGGACG GGCTCTACCA GCTGGGCACG
ATCCGGCAGT CGATCGGCGA CCTGGACGCG GCCGTCGCGT CGCTCACCGA GTCACTGGAA
CTGCACCGCG CGCTTCGCCG CAACGTCCAT GAGGGACTGT CCCTGTACCG GCTGGCCGAG
GCCGAGCTGG GACGCGGGGA TGCCCGGACG GCCCACCGCC ACGCCGAGGC GGCGATCGCG
AAGTTCACCG ACATCGGCGA CCAATGGGGA CGGCACTCCG CCGAGGTCGT GCTGGGCCGG
ATCCTGTTGG CCACCAACGA ACCCGCGCGG GCCCGCGAAC TGATCGGCAA CGCCGCGACC
GGCCTCGAAG CCCTCGGACG CGACACCGAG GCCGCCGAAG CCCGCGCGAT ACTCGACGAT
CAGTCGCCCT GA
|
|---|
| Protein sequence | MGISVTAPLR FQLLGPVRAW RDGEELRLGS PQQRLVLVRL LIGEGRPVSI DQLSATLWRD
DPPPAARSTV RTYLSRLRSV LGAGIIDSRE HWYSLRVGEV DAWRFAALLR EAEATPDRDR
ARRLLSQALD LCQDIPLAEL PGEWARAQRI RLEEERDRAV ERRARLDLDF GRPADAAAAL
ARLCAEYPLR ERPHQLLMLA LYRDGRKAEA LTVHNDLRRR LAEQLGIDPG DETAELHRRI
LRADPELAAP PPIAAPDAEP PRRGPAQLLA DIPDFTGRDD VVRELTALLT EERDAAPVVV
VTGIGGAGKT TLATHVGHRV AADFPDGQLY VDLRGADEVP HEPLAAQRGM LRSLGVSTED
IPAAEDECAA LFRSTMASKR LLLLLDNAAD TAQVRALLPG AAGCAAIVTA RSTLTGLTGA
RYVRLSALEP GEAVTLLRRV VGTERVDAES AEALNVVTAC GSLPLAVRIA AARLVARPQW
TVGQFAERVR DEQRRLAELR AGDLAVEAAF ALSYRQLDEQ HAHAFRLLTV PDAPELALAT
AAAVLGRGEL DTEGLAEDLV DLNLLESPAY RRYRMHDLTR LFGRGKTDAA ERDAALRRLA
DYYVATAYNG RRAVESDGRV INGVLPTASE GTGFASAAEA ERWLDTETDA LLLTLRQLAR
QLPAAVRLAG DLLRVIANVH IISSPRRGDL FAAAGAIAAA ARTHGDAFTE GRALLQQADC
HLAEARFTEA KALATTALEL AERSGDGYGH ASSQACLGVT AFYADDDPEA AVKLFSAAYE
GFSALSVGAE AGKLLATRAR ILLRLGRRTE AVADAVEAVA RLREHGVGTA LADGLYQLGT
IRQSIGDLDA AVASLTESLE LHRALRRNVH EGLSLYRLAE AELGRGDART AHRHAEAAIA
KFTDIGDQWG RHSAEVVLGR ILLATNEPAR ARELIGNAAT GLEALGRDTE AAEARAILDD
QSP
|
|---|
| |