| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Snas_5436 |
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| Symbol | |
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| ID | 8886645 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Stackebrandtia nassauensis DSM 44728 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013947 |
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| Strand | + |
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| Start bp | 5766988 |
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| End bp | 5768823 |
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| Gene Length | 1836 bp |
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| Protein Length | 611 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | |
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| Product | Type IV secretory pathway VirD4 protein-like protein |
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| Protein accession | YP_003514161 |
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| Protein GI | 291302883 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.561912 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGATC ACACCACCGT CACCCGGCCG CTGTTGTCGA CACCGGCCGA ATACGCCATG
GCCCTCCTCT TGGCCGCGAT CGCGATCACG ACCGCATGGG TGTGGAGCGC GGGCCAACTG
GCAGCGATCA CCACGTCGTG GTCGTGGCTG CACGTCGGCA TCGGCGACGC CTTCACCACC
GCCTTGCAGC TGCCCCGGCA TCTGGAGGAT CCGAGATTGG CCTGGCCAAT TACAGCGCGA
GGGCAGTTGC CGGGGCCGGT CGGCATGTAC GCCGCCTTCG TCCTGGCCGG TATCGGGTAC
GCCGTCCTCG GCGCTGTCGT CGTGCGGTGG ATGGCCGGTC GGCGACGGCG TCGCGGGTTC
GCGTCCCGAA CCGACCTCGC CAAGTCCCTG ACGCCGTCGG CGGCCCGAGC CCGCGCCGCC
CGGCTTCGCC CCGAACTGGG CCACAAGCCC TCGGTCAGGG ACGTGTCGGT GGATCTGGGA
ACCGCAGTCG GGACCGGCCA GAAGCTGGCC GCGCCGATCG ATTCCTCCGT ACTCGTCCTG
GCCGCCCCGC GGGTCGGCAA GACGTCGCAG CTGATCATTC CCTGGCTGGC GGACTGGCCG
GGCCCGGCAC TGGCGACGTC GGTGCGCCGC GACGTCGCCG ACAACACCTA CCAATTGCGG
CAGCGCACCG GGCCGGTGGC CGTTCTCGAC TTGACCGGCA CCTCGTGGCC CGATCTCTTG
GCGTGGTCGC CGTTGGACGG CTGCCAGGGA TTCGACAAGG CCAGGCAGCG CGCTGACGTC
ATGATCTCCA TCGGCAAGTC CGAATCCTCT GACTCGACCA ATGCGGGCTT CTTCGGGCTG
ACCGCGACCA ACTTGATGGC CGGCTGGCTG CACGCCGCGG CCATCAGCGA CGCCACGATG
AGCGACGTCC TTCGCTGGTC CCTCAACGAA CGCGACGACA CACCGGTGAG GATCCTGGCC
GACGCCGGAA CCAACGCCGC CGACGGCATC GCCGACCTGT TGGACGACAT CTACCGTTCG
CCCTCCGACA CCCGCTCCAA CATGTGGTCA ACCGTCCAGA CCGGAGTCGC GCCGCTGCTG
GCGACCCACG CCCGACGAAC CTTCTGCCCC CCGCCGGGCG CCGGGTTCAA CATCGAGGAG
TTCCTGCGCC AATCAGGCAC CCTGTATGTC CACGTTGCCG ACGACGAAGC CGGCCACTTG
GCCCCGCTGG TCTCGGCGTT CGTCGACGAG GTCACCCGCA CCGCCAAGCG CATCGGCGAC
GCACACCCCA CCGGCCGTAT TGACCCACCT TTGGGGATGA TCCTGGACGA GGTCAACAAC
GTCTCGCCCT TGCCGAATCT GCCGTCGCTG ATGAGTTACG CCGCCGGTTC CGGCATCTTC
ATCGCCGCGG TCCTGCAATC GCTGGCCGGG GCTCGGGAAC GTTGGGGTCG CGAAGGTGCC
GACAAGCTGT GGGCCGCGGC CACCGTCAAG ATCGCGCTCG GCGGTCTACC CGAAGACGAG
CTGCAACGAT TCTCCACACT GGTCGGCGAA TACCGGGAGA AGCTGACCAC GCCCCAATAC
AGCCACCACG GCACACACCT GTCCACCACT CTGGTCGACC GCAAGATCCT CAGCCCTGCC
GAGATCCGCA CCCTGTCGGA GTCCGAGCGC GAAGCGCTGG TCGTCCACGC GACCACCCCG
GCCGTCAAAG CCCGGCTGGC ACGTCACTAC GAAACCAAGC ACGCCAAAGC GTATGCCGCA
TCAGTGGAAG CGATGCAGCA AGCCACTACG ACTGCACCAG AACCGATGCC AGAAACAACG
GCTCCCTGGA AGCTCCCGAA CGGAGGCCAG TCATGA
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| Protein sequence | MSDHTTVTRP LLSTPAEYAM ALLLAAIAIT TAWVWSAGQL AAITTSWSWL HVGIGDAFTT
ALQLPRHLED PRLAWPITAR GQLPGPVGMY AAFVLAGIGY AVLGAVVVRW MAGRRRRRGF
ASRTDLAKSL TPSAARARAA RLRPELGHKP SVRDVSVDLG TAVGTGQKLA APIDSSVLVL
AAPRVGKTSQ LIIPWLADWP GPALATSVRR DVADNTYQLR QRTGPVAVLD LTGTSWPDLL
AWSPLDGCQG FDKARQRADV MISIGKSESS DSTNAGFFGL TATNLMAGWL HAAAISDATM
SDVLRWSLNE RDDTPVRILA DAGTNAADGI ADLLDDIYRS PSDTRSNMWS TVQTGVAPLL
ATHARRTFCP PPGAGFNIEE FLRQSGTLYV HVADDEAGHL APLVSAFVDE VTRTAKRIGD
AHPTGRIDPP LGMILDEVNN VSPLPNLPSL MSYAAGSGIF IAAVLQSLAG ARERWGREGA
DKLWAAATVK IALGGLPEDE LQRFSTLVGE YREKLTTPQY SHHGTHLSTT LVDRKILSPA
EIRTLSESER EALVVHATTP AVKARLARHY ETKHAKAYAA SVEAMQQATT TAPEPMPETT
APWKLPNGGQ S
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