| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Snas_5417 |
|---|
| Symbol | |
|---|
| ID | 8886626 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stackebrandtia nassauensis DSM 44728 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013947 |
|---|
| Strand | + |
|---|
| Start bp | 5748756 |
|---|
| End bp | 5751662 |
|---|
| Gene Length | 2907 bp |
|---|
| Protein Length | 968 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | |
|---|
| Product | Lantibiotic dehydratase domain-containing protein |
|---|
| Protein accession | YP_003514142 |
|---|
| Protein GI | 291302864 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.944486 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGGCC AACTGCTGAT GACCAGCCAC AGCACGCGAC GCGGGACGGC ATTCACTACG
CCGTTCCGCG TCGCGGATCC CCGGTCCGGG CTGGCCCGGC TTCCGCTGTT GCACAACGAT
CCCAGCCCGA ACACCTCGAT AGATCCTGTC GTGGCCGAGG GGATGTTCCT TTGCTCCGAG
ATCCACGCCG ATGTCTCCCC CGACAGCGCC GAGCAGCGCC GCGCCACCGA ACGGGCATTT
GACATCCGCG CACGGCGACG CACCACCCCG CAAGGCGTGT TCGCGGGCGT CACCGAACTG
GACATCAACG TCGCGGCGTC GACCCTGTCC GTCCGCACCG AGCACAAAGT CCGGTCGTAC
CCCAATCCCG TGTGGGTCCA TGAGATCGGT GATCGCGTGC TGGACAGCGC CGCCGTGTTG
CACGCGCTGA CCTATACGAC CAACAATCTC GCGGCGCGGC GCGGTGACCG CCTGGATGTC
CAACGCCCCT CCAGCGACCC GCGAACCGGA CCGCAGCGCA TGAGCGTTCG CCGCACCGAG
GCCGTCGAAG TCGTCCTGGA CGTCGCTCGG TCCGGTGCGT CGTGGAAGCA GATCACCACC
GCGCTGACAC AACGGTGGCC GAGCATCCAG GACACCACGG TTGAGGTGGT CATGCGGCAG
CTGACCCGCA GCGGTTTCTT GTTGACCGAC CTGGATCCCG TCGATACCTG CACTGACCCG
CTCGGTCACC TCCTGGCCAA ACTCCCGGCG TCCGAACCGG TACGCGAACC GCTGTCGTGG
CTGCGCGCCG CGCTGGCCGA AGCCGATGCA CACCCGCCCG GCCACCCAGC ACGTATGGCC
GCGCTCAAGA CCGCGCGCAA TATCGCCGAC GACCTGTTCG CGACCTGGCG ACCCATCTGC
ACCGACACCG CGATGAACGC CCACATCTCC ATCCCGGCAC GCGTGGCCGA AGAGGCCGCT
CAAGCCGCCA ACGTCTTGTG GCGCATGCCG CCTCGGCATG ATCCGCTGGC CGAATGGCAC
GAACGCTTCC TCCACCGCTA CGGCACCGGC CGTCTCGTGC CCCTGCTGGA GGTGTGCGAC
CCCGTCACCG GATTGGGTTG CGACCCCGGC AACACCGAAG TAGTGCCCCC TCCGGAATCC
ACTGAAGCCT TGGCCCGGCT GATCAACGTT GCGTTGACCT CCAACAAGAT GGAGGTACAG
CTGGACGCGG CAACGATCAC CGCGCTCGAC CAGCGCCGCC CCAGTGACGC TTGCGAACCT
TCGGCTGAGC TGTACGCGAC GGTCGTTGCC CGTGACGAAC ACGACCGCGA CGCCGGGAAG
TTCGTCCTGG CCGTCACCAA CATGGCTTCA CCGGCCGGGT CAACTCGCGC CCGGTTCGCC
GGCCTGCTCC CCGACGCCTC CGTTGCGAGC GACCCAGGGC ACGGCACCAT GACCGCCGAA
CTGGCATTCC GGCCCACGTC CCACACCGTC GCGGCGCTGA CCGGCCGCGC GGACAACGCG
CCGTGGCGCA TCCCGATCGG CACGATCCCC CAGTCCGGCG ACCTCGCGCT GGACGACCTC
GCTGTGGTCT CTGACGGCGC CCGCCTGAGG CTTTGGTCCA CACAGAACAA CCGGCCGGTT
CGGCCCGTCC ACCACAACCA GGTAGGCCAC CACCTGATGC CACCCGTGGC CGCGTTCTTG
TGCCTGCTGG GCCAGCACGG CAACACCGGG TTGAGCCCGT GGACATGGGG ACCATTCGAG
CGTGCCCCCT TCACCCCACG GGTGCGCTTC CGCGACGTCA TCCTGTCCCC GGCCCGCTGG
CGACTCCCCG AAGAGGTCCG AGACGCCGCC ACCGACCGGT CGACATGGGC CACGGCACTG
CGACGCTGGC GCACCAGCGC CCGGCCCGCT CCACCGGCCA CCGTCGTCAT CGACACCAGC
GACCGAAAAC TTCCCCTTGA CCTCGATCGT GGCGACGACC GCGAACTCCT GCGCCGCTAC
GTCAACCGAG ACGTGACCGC GGTGACCGAA CCGCCTGGCG GCCCCGACGC GGTTCAGGCC
GTGGCCCTCG GAGAAAGAGG GCACCACGTC TTGGAGATTG TCGTGCCGGT CTCCGCTTCG
CACACCGAGG AGACCGCACC ACCGGCGCCG GCGCTGGCAC GCCAATCCAG ACACAGCGTG
TTCACGCCGG GGAGCGAATG GCTGTCGCTG GCCATCGATG CTCCACCGTC GACTCAAGAC
GCCGTGCTGG CTCGCCTCGC CGACGCCGCG CACCACGCGA CCGGGCTGTG GCACCGATGG
TTCTGGATTC GCTACCACAC TCCCGCGCGC GGACCCCACC TTCGAGTCCG GTTCCGCGGC
GACCCGAGGC CCCTGGGCGG GCAACTACTC CCGCTGTTGG GCGACACCTG TGCGAACCTG
ACCACTGATG GTCTGTCCGG TGGATTCGGG ATCGAGGAGT ACCGCCAAGA GATCGAACGC
TACGGCGGCG AGCACGCGAT CGAATACGTC GAAGACACCT TCCACCACGA CGCCAACCTT
GTCGCACATC TCCTGGCCGA AAGCTCCGAC CCGGATGAGC GCCTGGCGTT GACCGCCGCC
TCGGCCGCCG AGATCGTCCG CATCGTCGCC GACGGGAACC GCGCGGCTCT GGTTCCGCAC
CGTCTGGAGA GGGCAGACCG TCGCACCCAT GCCCGTGTCC GGCCTCGCGC CCGCTCCATC
GATGACGGCA CGCCCGCTCA TCGGCCACTG TGGTATGAGC GCACCGCTGC CCTGACGGCA
TACCGCGCGG TCCTGCCACC GGACCGCCGC ATCGACTGCG CTTCATCGCT GATTCATATG
CACGCCAACC GTCTCCTGGG CGACAACCAT CGTGAGCGCA TCGCACGCGC ACTCGCCGTA
GATCTCATCG CGCGGGAGGC CCCATGA
|
|---|
| Protein sequence | MLGQLLMTSH STRRGTAFTT PFRVADPRSG LARLPLLHND PSPNTSIDPV VAEGMFLCSE
IHADVSPDSA EQRRATERAF DIRARRRTTP QGVFAGVTEL DINVAASTLS VRTEHKVRSY
PNPVWVHEIG DRVLDSAAVL HALTYTTNNL AARRGDRLDV QRPSSDPRTG PQRMSVRRTE
AVEVVLDVAR SGASWKQITT ALTQRWPSIQ DTTVEVVMRQ LTRSGFLLTD LDPVDTCTDP
LGHLLAKLPA SEPVREPLSW LRAALAEADA HPPGHPARMA ALKTARNIAD DLFATWRPIC
TDTAMNAHIS IPARVAEEAA QAANVLWRMP PRHDPLAEWH ERFLHRYGTG RLVPLLEVCD
PVTGLGCDPG NTEVVPPPES TEALARLINV ALTSNKMEVQ LDAATITALD QRRPSDACEP
SAELYATVVA RDEHDRDAGK FVLAVTNMAS PAGSTRARFA GLLPDASVAS DPGHGTMTAE
LAFRPTSHTV AALTGRADNA PWRIPIGTIP QSGDLALDDL AVVSDGARLR LWSTQNNRPV
RPVHHNQVGH HLMPPVAAFL CLLGQHGNTG LSPWTWGPFE RAPFTPRVRF RDVILSPARW
RLPEEVRDAA TDRSTWATAL RRWRTSARPA PPATVVIDTS DRKLPLDLDR GDDRELLRRY
VNRDVTAVTE PPGGPDAVQA VALGERGHHV LEIVVPVSAS HTEETAPPAP ALARQSRHSV
FTPGSEWLSL AIDAPPSTQD AVLARLADAA HHATGLWHRW FWIRYHTPAR GPHLRVRFRG
DPRPLGGQLL PLLGDTCANL TTDGLSGGFG IEEYRQEIER YGGEHAIEYV EDTFHHDANL
VAHLLAESSD PDERLALTAA SAAEIVRIVA DGNRAALVPH RLERADRRTH ARVRPRARSI
DDGTPAHRPL WYERTAALTA YRAVLPPDRR IDCASSLIHM HANRLLGDNH RERIARALAV
DLIAREAP
|
|---|
| |