Gene Snas_4439 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSnas_4439 
Symbol 
ID8885641 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStackebrandtia nassauensis DSM 44728 
KingdomBacteria 
Replicon accessionNC_013947 
Strand
Start bp4733057 
End bp4733875 
Gene Length819 bp 
Protein Length272 aa 
Translation table11 
GC content72% 
IMG OID 
Producthemolysin A 
Protein accessionYP_003513177 
Protein GI291301899 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.114534 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.104243 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCGGCGC GTAGACGCCT CGACGCGGAA CTGGTGCGGC GGGGCCTGGC CCGGTCGCGG 
GCGCACGCCG CGGAACTGAT CGCGGCCGGA CGGGTGCGGG TGCGGGGCTT CACGGCCACC
AAACCCGCCG CCGGGGTCGA CCCGGCCGAT CCGGTGCTGC TGGCCGGGGA CGGCGATGAC
TACGTCTCGC GGGGCGCGCA CAAACTCGTC GGGGCGCTGT CGGCGTTCGC CGATCTCGGT
GTGTCCGCGA AGGACCGCCG CTGCCTGGAC GCGGGGGCCT CGACGGGCGG TTTCACCGAC
GTCCTGTTGC GCGAGGGCGC GCGCGAGGTG GTCGCGGTCG ACGTCGGTTA TGGACAGCTG
GCGTGGAGCC TGCGCACCGA CGAACGGGTG ACGGTCCACG ACCGCACCAA CATCCGGCAC
CTGACGGCCG CCGACATCGA CGGGCCGGTG GAGCTGACGG TGGCGGACCT GTCGTTCATC
TCGCTGCGGC TGGTGCTGCC CGCGCTGATC GCCTGCACTC GCGCCGACGG CGTCATCGTG
CCGATGGTCA AACCGCAGTT CGAGGTCGGC CGCGACAAGA TCGGCTCCAA GGGGGTCGTG
CGCGAACCGG CGGTCCGGCT GGAAGCGGTG CGCGGCGTCG TGGCGGCGGC CGCCGAACTC
GGCTGGACGA CCGTCGGCGT CACCCGCAGC CCACTTCCCG GCCCGTCGGG GAATGTGGAG
TTCTTCTGCG CGTTGAGAAC CGACGCCACC GCCATGAGCG ACGCCGACAT CGAGATCGCG
GTGACGGCCG AAGCAGACGA GAAGGGAAGC CCGACGTGA
 
Protein sequence
MAARRRLDAE LVRRGLARSR AHAAELIAAG RVRVRGFTAT KPAAGVDPAD PVLLAGDGDD 
YVSRGAHKLV GALSAFADLG VSAKDRRCLD AGASTGGFTD VLLREGAREV VAVDVGYGQL
AWSLRTDERV TVHDRTNIRH LTAADIDGPV ELTVADLSFI SLRLVLPALI ACTRADGVIV
PMVKPQFEVG RDKIGSKGVV REPAVRLEAV RGVVAAAAEL GWTTVGVTRS PLPGPSGNVE
FFCALRTDAT AMSDADIEIA VTAEADEKGS PT