Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Snas_4164 |
Symbol | |
ID | 8885365 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Stackebrandtia nassauensis DSM 44728 |
Kingdom | Bacteria |
Replicon accession | NC_013947 |
Strand | + |
Start bp | 4456503 |
End bp | 4458569 |
Gene Length | 2067 bp |
Protein Length | 688 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_003512908 |
Protein GI | 291301630 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.412767 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.407902 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGGAAGCG GGGGCTTCGC CGACGAGCCG ATGCGCATGA GCGACGGCAT GCATCGGCTG TTCAACAGCG AGTTGCGCAT CGCCACCGTC ATCGTCGACG CCACCGGCAC CATCACGTAC TTCGGCCCCA ACGCCGAGAC CCTGACCGGG TTCCGGCACA CCGAGATCAT CGGCCGGGAT CTGCAGGTCG TCTCCGGCAC GTCGGCCTAT TTCGACAGTC GCGAGTACCT GTCCCGGCCG CCGGGCGCCG CGCCGGAGTT CCGGCGGCTG CGCCGCTCCG ACGGCAGCAC CCGGGCGGTG CAGGTCTACC GGCATCCACT GCCCAAACCC ACAGGACCGC CCGACACGCT GCTGCTGGTG GTCGACGTCG CCGAGAACGC CGAGGCCGAG GTGGGACTGG GGCTGCTCAA CGCGTTCTTC CAGCAGTCGA CCGTCGGTTT CGTCATCATG GACACCGAGC TGCGGTACGT GGCGCTCAAC GAGGCCCTGG CCCGGCTCAA CCGGCGCCCG ATCGTCGACC ACCTGGGCCG CCGGTTTCGC GAGATCGTCT TCTCCACCGA CATGGACGCC TACGAGGCGC TGCTCAAGGC CGTGATCCGC ACCGGGGAGC CGGTGACGAA CCTGCACGTG GCCGGGCACC CCACCGCCGA ACCCGGTACC AACCAGGCCT GGTCGGTGTC GTGCTACCGG ATCGCCGAGT CCTCCGGCCG TCCGGCGGGG CTGTGTGGCG TGGTCATGGA CATCACCACC CAGGAACGCT CCATGATCGA TTCGGCCCGC ACCGGCGCGC GGCTGGCGCT GCTCAGCGAG ATCGGGGCCG CGCAGATCAC GACGCTGCGC GACTTCCGCA AGGCGGCGCA GAAACTGACC GAGATCCTGG TCAGCGACTT CTGCGACATG GCGGTGGTGG ACGTCGTGCA CAGCATCGTC GCCGGTGAAC TGCCGCCCGA CCACCCCACC CCCGACACCC TGGTCAGCCG GATCGGCGGC GCCGCCCGCG AACCGTCCGA TGCGTCCCAC AAGCTCCTCA ACGTCGACAA CCCCCGCCCC GCCTACGAGA CCGACGTGTT CGCGCACGCG CTGCTGTCCA ACCGGCCGCA GAAGGTCGAC AACCCCCGCA TCGAGCAGGC GCAGGCGCTG TCCAAGGAGC CCGAGCGCGA GCAGGCCGCC CGGCAGCTGG CGCCCCGCTC GGTCATCATC GCGCCGCTGC GGGCCCGCGA CGTCACCCTC GGCGCGCTGA CCTTCGTGCG GTTCGGGAAG CGCAAACCCT TCGACGAGGA GGACGTGGTG CTGGCCGGGG AGATCGCCGA ACGCACCGCG CTGGGCATCG ACAACTCGCG GCTGTACGGC ACCGAGAAGA ACACCGCGCT GACGCTGCAA CGCAGTCTGC TGCCGCTGCG GTTGTCGGAG CGGCCCGAGG TCTCGGTGAC CTACCGGTAC CGGCCCAGCC GCAGCGACCT GCGGGCCGGT GGCGACTGGT TCGACATGAT CACGCTGCCG GGCCACCGGG TGGCCCTGGT CGTGGGCGAC GTCGCCGGGC ACGGCATCAC GGCGGCGGCC GCGATGGGGC AGTACCGCAC CGCGGTGCGC ACCCTGGCGC ACATCGGCCT GGAGCCGTCG GTGCTGCTGA CCCGGCTCAA CGAACTGGCC TTCGACTTCG GCACCGACAT CACCGCGACC TGCGTCTACG TCCTGTACGA CCCGGTCAAC CACAACTGTG TCATCGCCCG TGCGGGTCAT CCTCCCCCGG TGCTCGCCAC CACCGATGGG GTGGCGGAGA TACTGGAGGT GGGTCCGGGC CCGCTGCTGG GTGCCCTGAC CGAGGCCGAG TACCAGGCTG CCGCCGTCGA GACGCCGCCC GGCACCCGGC TGCTGATGTA CAGCGACGGT GTCGTGGAAT CACGGCACCA GGCGCTGGAC GACGGCATCG CCGAGCTGGT CCGGCACCTG CGGACCCGAC ACGCGGACGA GGAGGTGTGC GACCGCATCA TGGAGACTTC CCCCAGTACC GAGGACGACC GAACCGTGTT GTTGGCCCGA TTTCATGGGC TACGCTCCCC CGGTTAA
|
Protein sequence | MGSGGFADEP MRMSDGMHRL FNSELRIATV IVDATGTITY FGPNAETLTG FRHTEIIGRD LQVVSGTSAY FDSREYLSRP PGAAPEFRRL RRSDGSTRAV QVYRHPLPKP TGPPDTLLLV VDVAENAEAE VGLGLLNAFF QQSTVGFVIM DTELRYVALN EALARLNRRP IVDHLGRRFR EIVFSTDMDA YEALLKAVIR TGEPVTNLHV AGHPTAEPGT NQAWSVSCYR IAESSGRPAG LCGVVMDITT QERSMIDSAR TGARLALLSE IGAAQITTLR DFRKAAQKLT EILVSDFCDM AVVDVVHSIV AGELPPDHPT PDTLVSRIGG AAREPSDASH KLLNVDNPRP AYETDVFAHA LLSNRPQKVD NPRIEQAQAL SKEPEREQAA RQLAPRSVII APLRARDVTL GALTFVRFGK RKPFDEEDVV LAGEIAERTA LGIDNSRLYG TEKNTALTLQ RSLLPLRLSE RPEVSVTYRY RPSRSDLRAG GDWFDMITLP GHRVALVVGD VAGHGITAAA AMGQYRTAVR TLAHIGLEPS VLLTRLNELA FDFGTDITAT CVYVLYDPVN HNCVIARAGH PPPVLATTDG VAEILEVGPG PLLGALTEAE YQAAAVETPP GTRLLMYSDG VVESRHQALD DGIAELVRHL RTRHADEEVC DRIMETSPST EDDRTVLLAR FHGLRSPG
|
| |