| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Snas_3866 |
|---|
| Symbol | |
|---|
| ID | 8885066 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stackebrandtia nassauensis DSM 44728 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013947 |
|---|
| Strand | - |
|---|
| Start bp | 4129207 |
|---|
| End bp | 4131309 |
|---|
| Gene Length | 2103 bp |
|---|
| Protein Length | 700 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | |
|---|
| Product | transport system permease protein |
|---|
| Protein accession | YP_003512614 |
|---|
| Protein GI | 291301336 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGACCC CCGCGGCGGC CCCAGACGGG GTCGCCGCGA CCCTTTCCGG CAGACCACCG
CGCCGCCTGC TGGTGGCGAC GCTGTTTCTC GCCGTCCTCG CCGCGATCGT GGTGCTCGCG
GCGGTTCACA TCACCCAGGG CACCTCGGGT GTCAACGCGA CCGACCTGCT GGGACTGGTC
TTCGGCGGCG AGGACCAGCA GGCGCTGCGG GTGCTGGTGG CGTCCCGGAT GCCGCGACTG
GCCGCAGCAC TCGCGGTCGG CATCGCCCTG GGGGTCTCGG GCGCGGTGCT GCAATCGGTG
GCGCGCAACC ACTTGGCCTC GCCGGACACG CTGGCCGTCA ACGCCGGTGC GCACCTGACG
GTGACGTTCG CGGCCGTGGT GGGGCTGAGC CTGCCGATGC TGCCCGCCGG GATGCTGACC
TTCGCGGGTG GGCTGGCCGC GGCGGGGCTG GTGATGGCGA TGGCCGGAGG CGGGTCGGGC
ACCACCCGGC TCATCCTCGC CGGAACCGCG ACCGCGTTGG CGTTCCACTC GCTGACGATG
CTGCTCATCA TCCTCAACGA CCAGACCACC GTGGGGCTGT TCGCGTGGGG CAGCGGATCG
CTGTTGCAGA CCAACATGGC CGGGTTCTGG CAGGCGGTCC CCGTCATCGG CGTGGCGGTG
CTGGCCTGCC TGTTCCTCGC GCCCAAGCTC GACATCCTGA CCCTCGGCGA CGACACCGCG
ACCGTCCTGG GCGTCAAGGT GACCCGCACT CGCGTCATCG CCACCGTGCT CGCGGTGCTG
CTGGCGGCCA CGGCCGTCGC CGTGGCCGGG CCGGTCGGCT TCGTGGGCCT GTGCGCGCCG
GTCGTGGTGC GGCTGCTGTC GCGGCTGGCC CCGGGACTGG CCCGGCACCG GGTGCTGATC
CCGATGGCCG GACTGGCCGG GGTCGTGATC GTGATCGGCG CCGACGTGGT GGTGCGGGCG
ATCTTCGGCG CCGCCGCCGG AATCGTCATC CCCGTCGGCG TGGCCACCTC CGTGCTGGGC
GCCGTCGTGC TGGTGTGGCT GGCACGTCGG CACCGCGACG CCGGTGGCGC CCGGCAACCC
GCCACCGCCC GCATCGCGAT GCTGCGCTCA CGGGTGTTCG TGACCGTCCT GGTCACCGGA
CTGCTGGTGG CGGTGGTCGC CGGATTCACG CTGGGAATGC TCGGCGGCGA CACCTGGGTC
CTCACCGGCG ACGTGCTCAA CTGGCTGACC GGTAACACCG GCCCCGGCTT CACCCACATG
CTCGACCAGC GGTTCCCCCG GGTACTGGCC GCCCTGCTGG GCGGAGCCGC ACTGGCGATC
TCGGGAACCG TGGTGCAGTC GGTGGGCCGC AACCCGCTGG CCGACCCCGG GATCCTCGGC
ATCACCGGCG GCGCCGGACT GGCCGCCGTC ATCGTGATCT CGCTGTACCC GGCGGCCGGA
ATCGGCGTCA TGACCGTCGC CATCATCCTG GGCGCCCTGC TGGCCTTCGC GCTCGTGTAC
GGACTGGCCT GGCGCGGCGG CCTCAACTCC GACCGGCTGA TCCTCATCGG CGTCGGGGTC
TCGACCGGGG TGATGGCCCT GGTCACCTTC ATCATCGTCT ACACCGACCC GTGGAACTCC
GGCAAGGCGC TGACCTGGCT GTCGGGCACC ACCTACGGCC GCACCCTCGA CCAGCTGGTC
CCGGTCGGCC TGGCGCTGGC CGTCATCGCG CCGCTGGTCT TCACCGCCCG CCGCGAGATG
GACCTGCTGG CGCTCGACGA GGACACCCCC CGGGTGCTGG GCGTCCGGCT GGAACGCACC
CGGCTGGGGC TGCTGGTGGC CGCGGCACTG CTGGCCGCCA CCGCCGTGGC CGCCGTCGGC
GTCATCGGAT TCGTCGGACT GGTGGCACCG CACGCCGCCC GGGCACTGGT CGGCAGCCGA
CACGTCCGGG TTCTGCCGGT CGCGGCCCTC TTGGGCGCGC TGTTGGTGAG CCTGTCCGAC
AGCCTCGGCC GCACCGTGAT CGCCCCGGCC CAGATACCCG CCGGACTGGT CACCGCGATC
ATCGGCACCC CCTATTTCCT CTGGCTCCTG TGGCGCTCAC GTACGAAAGG GACAATCGTA
TGA
|
|---|
| Protein sequence | MRTPAAAPDG VAATLSGRPP RRLLVATLFL AVLAAIVVLA AVHITQGTSG VNATDLLGLV
FGGEDQQALR VLVASRMPRL AAALAVGIAL GVSGAVLQSV ARNHLASPDT LAVNAGAHLT
VTFAAVVGLS LPMLPAGMLT FAGGLAAAGL VMAMAGGGSG TTRLILAGTA TALAFHSLTM
LLIILNDQTT VGLFAWGSGS LLQTNMAGFW QAVPVIGVAV LACLFLAPKL DILTLGDDTA
TVLGVKVTRT RVIATVLAVL LAATAVAVAG PVGFVGLCAP VVVRLLSRLA PGLARHRVLI
PMAGLAGVVI VIGADVVVRA IFGAAAGIVI PVGVATSVLG AVVLVWLARR HRDAGGARQP
ATARIAMLRS RVFVTVLVTG LLVAVVAGFT LGMLGGDTWV LTGDVLNWLT GNTGPGFTHM
LDQRFPRVLA ALLGGAALAI SGTVVQSVGR NPLADPGILG ITGGAGLAAV IVISLYPAAG
IGVMTVAIIL GALLAFALVY GLAWRGGLNS DRLILIGVGV STGVMALVTF IIVYTDPWNS
GKALTWLSGT TYGRTLDQLV PVGLALAVIA PLVFTARREM DLLALDEDTP RVLGVRLERT
RLGLLVAAAL LAATAVAAVG VIGFVGLVAP HAARALVGSR HVRVLPVAAL LGALLVSLSD
SLGRTVIAPA QIPAGLVTAI IGTPYFLWLL WRSRTKGTIV
|
|---|
| |