Gene Snas_3848 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSnas_3848 
Symbol 
ID8885048 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStackebrandtia nassauensis DSM 44728 
KingdomBacteria 
Replicon accessionNC_013947 
Strand
Start bp4108044 
End bp4108922 
Gene Length879 bp 
Protein Length292 aa 
Translation table11 
GC content69% 
IMG OID 
ProductRNA polymerase sigma-24 subunit, ECF subfamily 
Protein accessionYP_003512597 
Protein GI291301319 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAACGG CGACCGAGCT CTTCGAGCAA CACCGGAACC TGCTGTTCTC GGTGGCGTAC 
CGGATGCTCG GCTCGGCCGC CGACGCCGAG GACGTCGTCC AGGACTCCTG GCTGAAGTGG
TCGGCCGTCG ACCTGGACAC GGTGGACTCG CCCAAGGCGT ACCTGGTGCG CATCGCCAGC
AACACCGCGC TCAACCGGCT GAAGTCCGCC CAGGTGCAAC GCGAGTCCTA TGTGGGGCCG
TGGTTGCCGG AACCGATACT CACCTCCCCC GACATCGCCG AGGACGTGGA AATGGCCGAC
TCCGTCTCGA TGGCGATGCT GGTCGTCCTC GAATCGCTGA CCCCCGAGGA GCGGGCGGTG
TTCGTGCTGC GGGAGGTCTT CGGGTTCCCG CACACCGAGA TCGCCAGCGC CCTGGACCGT
CCCGAGGCCA GCGTGCGGCA GTTGGCGCAC CGGGCCCGCT CGCACGTGCA GGCCCGCAGG
CCCCGCTTCG ACGCCGACCG CGAGAAGCAG AAGCAGGCCA CCGAGGAGTT CCTGTCGGCC
GCCGCGGGCG GCGACATCAA CCGCCTCATG GAGATCCTCG CCCCCGACGC GGCACTGTGG
ACCGACGGCG GCGGCAAGGT CAAGGCACCG CTGCGCGACA TCCACGGCGC GCACAGGATC
GCGAACTTCT TCGTCAAGGT CGCGACCCAG CCGTGGCAGG GCTACCGCCC CGAACAGTGG
GAGTTCGCCG CCGCGCAGAT CAACGGGGCC AACGGCGTCC TGATCCGGGT CGAGGGCAAG
GTCGTCACCG CGTTCACCAC CGAGGTCCTC GACGGCCGCA TCACGGCGAT CCACCTGGTC
GGCAACCCGG ACAAACTGGC CCACCTCGAC GAGGATTAG
 
Protein sequence
MATATELFEQ HRNLLFSVAY RMLGSAADAE DVVQDSWLKW SAVDLDTVDS PKAYLVRIAS 
NTALNRLKSA QVQRESYVGP WLPEPILTSP DIAEDVEMAD SVSMAMLVVL ESLTPEERAV
FVLREVFGFP HTEIASALDR PEASVRQLAH RARSHVQARR PRFDADREKQ KQATEEFLSA
AAGGDINRLM EILAPDAALW TDGGGKVKAP LRDIHGAHRI ANFFVKVATQ PWQGYRPEQW
EFAAAQINGA NGVLIRVEGK VVTAFTTEVL DGRITAIHLV GNPDKLAHLD ED