Gene Snas_3498 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSnas_3498 
Symbol 
ID8884697 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStackebrandtia nassauensis DSM 44728 
KingdomBacteria 
Replicon accessionNC_013947 
Strand
Start bp3705717 
End bp3706463 
Gene Length747 bp 
Protein Length248 aa 
Translation table11 
GC content69% 
IMG OID 
ProductXylose isomerase domain-containing protein TIM barrel 
Protein accessionYP_003512254 
Protein GI291300976 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.503466 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000525778 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGACGCTC ACACACACCC TCCCGCCCTG CAGTTGTACT CCATACGGGA CCCGTTCGCG 
CAAGATCCAC TGCGGACGCT TCAGCGGGTC GCCGAGATCG GCTATCGCCA GCTCGAACTG
TGGGGAATCG TGGAAAACCT GGCGCCGCTG CGCGACGGCC TGCGCGACAC CGGGCTCACC
GCTCCCACCG CGCACGCCCG CATCACCGAC AGCGGCCACG AGGAAGCGTT CGCGGCCGCC
AAGGACCTCG GGGTCGACAC GGTGATCGAG CCCTATGTGG AGCCGAAACG CTGGGAGGAC
GCCGCCGACA TCGCCGCAAC GGCGTCGAGG CTCAACGAGC TCGCCGGAAT CGCCGCCGAC
CACGGACTGC GCCTGGGATA CCACAACCAC TGGTGGGAAC TGAAATACCG CGTCGGCGAC
CGCACCGCCT TCGAGGTGTT CGCCGACCAG CTCGATCCCG CCGTCATCCT CGAGGTCGAC
ACCTACTGGG CCACCGTCGG CGGTGTGGAC GCCGCGGAAC TGCTGCGCCG ACTCGGCGAC
CGGGTACACG CCATCCACGT CAAGGACGGC GGCTTGGCCG TCGACGGTTC CGGCCAGGTC
CCGGCGGGCC GGGGATCCGT TCCGGTGACC GAGATCCTGG CCGCGGCCCC GACGGCATTG
CGCATCGTCG AGTTCGACCA CTATGACGGC GACATCTTCG ACGCCGTGGC CGCCAGCTTC
ACCTATCTGA CCGGGGCCGA GCGATGA
 
Protein sequence
MDAHTHPPAL QLYSIRDPFA QDPLRTLQRV AEIGYRQLEL WGIVENLAPL RDGLRDTGLT 
APTAHARITD SGHEEAFAAA KDLGVDTVIE PYVEPKRWED AADIAATASR LNELAGIAAD
HGLRLGYHNH WWELKYRVGD RTAFEVFADQ LDPAVILEVD TYWATVGGVD AAELLRRLGD
RVHAIHVKDG GLAVDGSGQV PAGRGSVPVT EILAAAPTAL RIVEFDHYDG DIFDAVAASF
TYLTGAER