Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Snas_3498 |
Symbol | |
ID | 8884697 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Stackebrandtia nassauensis DSM 44728 |
Kingdom | Bacteria |
Replicon accession | NC_013947 |
Strand | + |
Start bp | 3705717 |
End bp | 3706463 |
Gene Length | 747 bp |
Protein Length | 248 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | |
Product | Xylose isomerase domain-containing protein TIM barrel |
Protein accession | YP_003512254 |
Protein GI | 291300976 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.503466 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.000525778 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGACGCTC ACACACACCC TCCCGCCCTG CAGTTGTACT CCATACGGGA CCCGTTCGCG CAAGATCCAC TGCGGACGCT TCAGCGGGTC GCCGAGATCG GCTATCGCCA GCTCGAACTG TGGGGAATCG TGGAAAACCT GGCGCCGCTG CGCGACGGCC TGCGCGACAC CGGGCTCACC GCTCCCACCG CGCACGCCCG CATCACCGAC AGCGGCCACG AGGAAGCGTT CGCGGCCGCC AAGGACCTCG GGGTCGACAC GGTGATCGAG CCCTATGTGG AGCCGAAACG CTGGGAGGAC GCCGCCGACA TCGCCGCAAC GGCGTCGAGG CTCAACGAGC TCGCCGGAAT CGCCGCCGAC CACGGACTGC GCCTGGGATA CCACAACCAC TGGTGGGAAC TGAAATACCG CGTCGGCGAC CGCACCGCCT TCGAGGTGTT CGCCGACCAG CTCGATCCCG CCGTCATCCT CGAGGTCGAC ACCTACTGGG CCACCGTCGG CGGTGTGGAC GCCGCGGAAC TGCTGCGCCG ACTCGGCGAC CGGGTACACG CCATCCACGT CAAGGACGGC GGCTTGGCCG TCGACGGTTC CGGCCAGGTC CCGGCGGGCC GGGGATCCGT TCCGGTGACC GAGATCCTGG CCGCGGCCCC GACGGCATTG CGCATCGTCG AGTTCGACCA CTATGACGGC GACATCTTCG ACGCCGTGGC CGCCAGCTTC ACCTATCTGA CCGGGGCCGA GCGATGA
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Protein sequence | MDAHTHPPAL QLYSIRDPFA QDPLRTLQRV AEIGYRQLEL WGIVENLAPL RDGLRDTGLT APTAHARITD SGHEEAFAAA KDLGVDTVIE PYVEPKRWED AADIAATASR LNELAGIAAD HGLRLGYHNH WWELKYRVGD RTAFEVFADQ LDPAVILEVD TYWATVGGVD AAELLRRLGD RVHAIHVKDG GLAVDGSGQV PAGRGSVPVT EILAAAPTAL RIVEFDHYDG DIFDAVAASF TYLTGAER
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