Gene Snas_3270 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSnas_3270 
Symbol 
ID8884469 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStackebrandtia nassauensis DSM 44728 
KingdomBacteria 
Replicon accessionNC_013947 
Strand
Start bp3457506 
End bp3458183 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content69% 
IMG OID 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003512033 
Protein GI291300755 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.8331 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.0947304 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGACCGATT CACCCAAGAG CACCGCCACC CGGGCCGGGC TCACCCCCGA GCGAATCGTC 
GACGCCGCCA TGGCCCTGAC CGAGGGAGAG GGGCTGCACA CCTGGTCGCT GCGGGACCTG
GCGAAGAAGC TGGACGTGGC GCCCTCGGTG ATCTACCACC ACATCGGCGG CAAGGACGAA
CTCAGCCGCT GCGTCGTCGA ACGGGTCATC ACCGCGTTCG ACCGGCCCGA CCCCGAGCTC
GACTGGCCGG ACTGGTTCCG GGCCCTGCTG TACCCGGCGC GGGCGAAACT GCGCGCCTAC
CCGGGGGTCG CGATGTGGCT GATGATGCAC GGCCCGGCCT TCGAGCACCT GATCCCGATC
ATCGACGACG GCATCGCCGC CCTGGAACGG GCCGGGTTCG CCGAGCGGAC CGGCCTGGCC
TACACCGCGA TCCTCAACAG CGCGATGCTC ACCGTCGCCG CCGCCGACGA ACGCAAGGTC
CACGCCGACG ACGGCTCCAG GGACCACGCG GCGATCATGC GCGACTTCGA ACGCGTCGGC
GCCGACAGCC CCGGCGTCGG CGTACTCAAG GAAGTGATCA CCTCGTTCAC CGACACCGCC
GAGGAAACCG GCGAGCACTA CTACCGCTTC GTCATCGACA CGGTCCTGGC CGGACTCGAA
CAGCAGCTTC CCGGCTAG
 
Protein sequence
MTDSPKSTAT RAGLTPERIV DAAMALTEGE GLHTWSLRDL AKKLDVAPSV IYHHIGGKDE 
LSRCVVERVI TAFDRPDPEL DWPDWFRALL YPARAKLRAY PGVAMWLMMH GPAFEHLIPI
IDDGIAALER AGFAERTGLA YTAILNSAML TVAAADERKV HADDGSRDHA AIMRDFERVG
ADSPGVGVLK EVITSFTDTA EETGEHYYRF VIDTVLAGLE QQLPG