Gene Snas_3096 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSnas_3096 
Symbol 
ID8884295 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStackebrandtia nassauensis DSM 44728 
KingdomBacteria 
Replicon accessionNC_013947 
Strand
Start bp3267997 
End bp3269733 
Gene Length1737 bp 
Protein Length578 aa 
Translation table11 
GC content70% 
IMG OID 
ProductGAF sensor signal transduction histidine kinase 
Protein accessionYP_003511860 
Protein GI291300582 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGGACG ACGAATCTCG CGTCCTGAAT GACCCGGTGC CGCGGACGGT AGCCGATACC 
CTCTCCGGAC TTCGCCTCAA CGAGCTGCTC GCCGAGGTGC AGGAACGGAT CGGACAGATC
GCCGCCACCC GCGACCGGTT GCAGCGTCTC CTGGACGCCA TCACGATGGT GGCCGGGGAC
CTCGACCTGG ACTCGACGCT GCGCCGCATC ACCGAGGCCG CCGTCGGGCT CGTCGACGCC
CGCTACGGTG CGCTGGGCGT GCTCGCCGCG CCCGGAGACC GCAACCGGCT GCGCAGCTTC
GTCACCGTCG GCATGAGCGA GGACGAACGG TCCCATATCG ACCACGAGCC GCACGGTGAG
GGCATCCTGG GGCTGCTCAT CAACCACCCG CAGGTCATCC GGTTGTCGGC GCTCAACAAG
CACCCCGACT CGGTGGGATT CCCCGCCAAC CATCCCAAGA TGGCCAGCTT CCTGGGTGCC
CCGATCCAGG TGCGCGACGA GGTGTTCGGC AACCTCTACC TGTCGGAGAA GCGCGGCGCC
TCGGAGTTCA ACAGCGACGA CGAGGTCGTC ATCCAGGCGC TGGCCGCCGC GGCGGGTATC
GCCATCGAGA ACGCCCGCAT GTACGAGCAG GCCACGGTGC GGCGGCGCTG GCTGGCCGCC
TCGTCCAAAC TCCAGGCCGA ACTGCTCAGC GGCGCCACCC TGGAGTCGGC GCTGGGGCTG
GCGGCCGTGC ACACCCGGGA ACTGCTCAAG GCCGACACCG TCTTCATCGC GCTGCCGGAG
CCCTACGAGG ACGACCTGCT GCGCGTCAAG GCCGTGGACG GCGACTTCGA CGACCGGCTC
ATGGGCATCA CGCTGACCGC GCCGGTGATG AGCGAAGTGC TCAAGGCCGG TGTCAGCGAG
GTCGAGGGCG AGTTCGCCGC CCTGCTGGCC GCCGCCGCCA AGACCCCGCC GGGGGAGTTC
GCGGCGGTGC TGGCGGTGCC GATCCAGATC TCCGACACCG GGGAGGGCAC GCTGGTGGCG
TTGCGGCACC GGGGATCGCC GCTGTTCTCG TCACTGAAAC TGCCCGACGT GGTGTCCTTC
GCGCAGGACG CGGCGCTGGC GATCCGCGCC GCCGAGGGCC AACGCGCCCA GCACCTGCTG
GACGTGCTGT CGGACCGCGA GCGCATCGCC GCCGACCTGC ACGACCACGT CATCCAGCGG
CTGTACGGCT GCGGCATGAA CCTGCAGGCG ACCCTGCCCA GGGTCAACGA ACCCGGGGCC
CGGCGCCGGA TCCAGACCGT CGTGGAGGAA CTGGACACCA CGATCCGCGA GATCCGCACC
TCGATCTTCG CGCTCCAGTC CACCAGCGAG GACTCCAGCG GCAGCCTGCG ACGGCGACTG
CTGGACGCGA CCGCGCAGAT GTCGGCCGAC AGCAAACTCT CCCCGGCGGT GTACCTGTCG
GGCGCCGTGG ACACGCTGGT GCCGGTGGAG ATCGCCGACC ACGCCGAGGC CGTGGTGCGC
GAGGCCGTCA GCAACGCCGT GCGCCACGCC CACGCCAGTC ACATCGTCGT CAGCGCCGAG
GCCGGGGACG ACCTGGTCAT CGACGTCACC GACGATGGTA AGGGCATCCC GGAGGAGGTC
GTGCACAGTG GCCTGGCCAA TATGGAGCGG CGAGCGCAGA CCTGCGGCGG CAACCTGACG
ATCGCGCCGA TGCCCGAAGG CGGCACCCGG ATCACCTGGC AGGTCCCGCT GCCGTGA
 
Protein sequence
MPDDESRVLN DPVPRTVADT LSGLRLNELL AEVQERIGQI AATRDRLQRL LDAITMVAGD 
LDLDSTLRRI TEAAVGLVDA RYGALGVLAA PGDRNRLRSF VTVGMSEDER SHIDHEPHGE
GILGLLINHP QVIRLSALNK HPDSVGFPAN HPKMASFLGA PIQVRDEVFG NLYLSEKRGA
SEFNSDDEVV IQALAAAAGI AIENARMYEQ ATVRRRWLAA SSKLQAELLS GATLESALGL
AAVHTRELLK ADTVFIALPE PYEDDLLRVK AVDGDFDDRL MGITLTAPVM SEVLKAGVSE
VEGEFAALLA AAAKTPPGEF AAVLAVPIQI SDTGEGTLVA LRHRGSPLFS SLKLPDVVSF
AQDAALAIRA AEGQRAQHLL DVLSDRERIA ADLHDHVIQR LYGCGMNLQA TLPRVNEPGA
RRRIQTVVEE LDTTIREIRT SIFALQSTSE DSSGSLRRRL LDATAQMSAD SKLSPAVYLS
GAVDTLVPVE IADHAEAVVR EAVSNAVRHA HASHIVVSAE AGDDLVIDVT DDGKGIPEEV
VHSGLANMER RAQTCGGNLT IAPMPEGGTR ITWQVPLP