Gene Snas_3047 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSnas_3047 
Symbol 
ID8884246 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStackebrandtia nassauensis DSM 44728 
KingdomBacteria 
Replicon accessionNC_013947 
Strand
Start bp3213321 
End bp3213830 
Gene Length510 bp 
Protein Length169 aa 
Translation table11 
GC content64% 
IMG OID 
ProductRNA polymerase sigma-24 subunit, ECF subfamily 
Protein accessionYP_003511811 
Protein GI291300533 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0780559 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCCCG AAGCGGAAGC CGAATACCGC GAGTTCGTGT CCGCACGTCT GGATCAGTTG 
GGAAGGTTCG CCTTCCTACT GTGCCGGGAC TGGCACCGCG CCGAGGACGC AGTGCAGAAA
GGTCTCGTGA AGCTCTACCT CCACTGGGAC AAGACCACGA TCAAGTCTCC GGACGCCTAC
GTGCGGCAGG TCATCGTCAA CGTCGTACGC GAGGAAGCCC GGCGGCACTG GTTCAAGCGG
GAACGGTCCA GCGACAGGCT TCCCGAACGC CACCACCCCG ACCCGGGCGA GGCGGGCAGC
GAACGGCTGA CCATGTTGGA CGCACTGTCT CGATTGCCCA AGCGGCAACG GATCGCTGTC
GTCCTCCGTA TCTGGGAGGA CCTGTCGGTT GAACAGACCG CCGAGATCAT GGCCTGTTCG
CCCGGCACCG TCAAGAGCCA GACCGCGCGA GGCTTGCAGA CACTGCGCGG GCTGCTGAGT
GAAACGATCC CCGAGGAAGT CACGACATGA
 
Protein sequence
MKPEAEAEYR EFVSARLDQL GRFAFLLCRD WHRAEDAVQK GLVKLYLHWD KTTIKSPDAY 
VRQVIVNVVR EEARRHWFKR ERSSDRLPER HHPDPGEAGS ERLTMLDALS RLPKRQRIAV
VLRIWEDLSV EQTAEIMACS PGTVKSQTAR GLQTLRGLLS ETIPEEVTT