| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Snas_1938 |
|---|
| Symbol | |
|---|
| ID | 8883130 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stackebrandtia nassauensis DSM 44728 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013947 |
|---|
| Strand | + |
|---|
| Start bp | 2059682 |
|---|
| End bp | 2060362 |
|---|
| Gene Length | 681 bp |
|---|
| Protein Length | 226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | |
|---|
| Product | transcriptional regulator, TetR family |
|---|
| Protein accession | YP_003510727 |
|---|
| Protein GI | 291299449 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.165177 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGACCG AAACCGCCCC TTCGAGCCGT CCGGTCGGCG GTCGCGCGGA CAAACGCGAG
TCGATCATCA GGGGAGCCAT GGCCGTGTTC GCCGAGGAGG GGTACACCCG GGCCAGCATC
GACGCGATCG CCAAACGGGC CGGGGTGTCG ACCCGCACCA TCTACAACCA CTTCCGGGAC
AAGCCGGAAC TGTTCCACGT CACCATCATG ACCAGCACCA ACGGCGTCGG CGACGCGATC
TCGGCGCTCA TCGAACGCCA CTTCCACAAG GTCACCGACG TGGAGGCCGA CCTCAACGCC
TTCGGCTTTG ACCTCGTGAC CTCAAAGGGG GAGTTCTCCG CCCACTTCGC GATGATGCAG
CAGGTCAAGA CCGAGTGGGC CCATGTGCCC GCCGAGGCGG CCCGGTTGTG GCGCGAGGCC
GGGCCCCGAC GGGTGAACAA CGAGCTCGCC GCCAAGCTCA GTGAGCTCGA CGCGAAGGGA
CTGCTGCGGG TGGAGAATCC ACAGCAGGCG GCGAAGCACC TGCAGACACT GGTGTGGGGG
AGCCTGCCGA TCGATTTCGA CCTGGCGGCG ACCCCCGAGT CCGAGATCGC CGCCCACGTG
GCCTCCGGGG TGCGGGTGTT CCTCTACGGC TACGCGGCGC CCTCGGAGTT ACCGGTGGCC
AGCGGGTCGG CCAGCAGCTG A
|
|---|
| Protein sequence | MATETAPSSR PVGGRADKRE SIIRGAMAVF AEEGYTRASI DAIAKRAGVS TRTIYNHFRD
KPELFHVTIM TSTNGVGDAI SALIERHFHK VTDVEADLNA FGFDLVTSKG EFSAHFAMMQ
QVKTEWAHVP AEAARLWREA GPRRVNNELA AKLSELDAKG LLRVENPQQA AKHLQTLVWG
SLPIDFDLAA TPESEIAAHV ASGVRVFLYG YAAPSELPVA SGSASS
|
|---|
| |