Gene Snas_1929 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSnas_1929 
Symbol 
ID8883121 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStackebrandtia nassauensis DSM 44728 
KingdomBacteria 
Replicon accessionNC_013947 
Strand
Start bp2050268 
End bp2050939 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content69% 
IMG OID 
ProductN-acetylmuramyl-L-alanine amidase negative regulator of AmpC, AmpD 
Protein accessionYP_003510718 
Protein GI291299440 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCCCGA TACCCCCGAC CTCGCGCCGC AACCTGCTTC GCGGAGCGAT CGTGGTCGGC 
GCCGGCACTG CGGTGGGCGG CGCCGCGCTG CTGACCACCA GCGTGGCCCA CGCCGACGCC
AAGGCCCCCG AGATCACCAG CTGCGCGGAC TGGGGAGCCC GCGAACCCAG CGGTGAACTG
ACCCAGCTGG ACGCCAACCC GACCAAGATC GTCATCCACC ACACCGCCAG CGGCAACTCC
GGCGGCGAGG ACCAGGAGTC GTCCAACGCC TTCGCCCGCG AGGTGCAGAG CTGGCACATG
GACGGCAACG GCTGGTCCGA CACCGGTCAG CACTTCACCG TCACCCGTGG CGGCTTCGCG
CTGGAGGGTC GCCACACGTC GTTGCAGCAC CTGACCGACG GCGCGGGCTT CGTCCAGGGT
GCCCACTCCC CGGGCGCCAA CACCGACGGC GTCGGCATCG AGAACCAGGG CACCTTCACC
GACAGCCTGC CGCCGGAGGC GCTGTACAAC AAGCTGGTCG AGCTGTGCGC CTACATCTGC
ACCCAGTGGG GCATCGACCC CAAGGAGATC TACGGGCACC GCGACTTCTA CAACACCGAG
TGCCCCGGCC AGGCGTTCTA CGACCAGCTG CCGAAGCTGC GCGAAGACGT CGCCGCGGCT
GTCGGAGGTT AG
 
Protein sequence
MSPIPPTSRR NLLRGAIVVG AGTAVGGAAL LTTSVAHADA KAPEITSCAD WGAREPSGEL 
TQLDANPTKI VIHHTASGNS GGEDQESSNA FAREVQSWHM DGNGWSDTGQ HFTVTRGGFA
LEGRHTSLQH LTDGAGFVQG AHSPGANTDG VGIENQGTFT DSLPPEALYN KLVELCAYIC
TQWGIDPKEI YGHRDFYNTE CPGQAFYDQL PKLREDVAAA VGG