| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Snas_1393 |
|---|
| Symbol | |
|---|
| ID | 8882580 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stackebrandtia nassauensis DSM 44728 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013947 |
|---|
| Strand | + |
|---|
| Start bp | 1478162 |
|---|
| End bp | 1479898 |
|---|
| Gene Length | 1737 bp |
|---|
| Protein Length | 578 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | |
|---|
| Product | methylmalonyl-CoA mutase large subunit |
|---|
| Protein accession | YP_003510193 |
|---|
| Protein GI | 291298915 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGACGCCA ACGACATCTC CGCAGGCCGC AAGCGCTGGC AGGAACGCTA CGACGCCGCT
CGCAAGCGGG ACGCTGACTT CACCACGCTG TCCGGGCTGG AAGTCGAGCC CGCCTATGGG
CCCGCCGAGG GCTCGACCGA CCCGCGGTTG GGGCGGATCG GGTGGCCCGG CGAGTTTCCG
TTCACCCGGG GGCTGTACCC GACCGGGTAT CGGGGGCGGG CGTGGACGAT TCGCCAGTTC
GCGGGGTTCG GCAACGCTGT TCAGACCAAC GAGCGGTACA AGATGCTGCT CAAGTCGGGT
GGTGGCGGGT TGTCGGTCGC CTTCGACATG CCGACGCTGA TGGGCCGGGA CTCCGACGAC
CCCCAGTCGC TGGGGGAGGT CGGGCACTGT GGGGTGGCGA TCGACTCCGC CGCCGACATG
GACGTCCTGT TCGGCGGTAT TCCGCTGGCC GACGTGACGA CGTCGATGAC GATCTCGGGT
CCGGCCGTGC CGGTGTTCTG CATGTACCTG GCCTCGGCCG AGCGGCAGGG CGCCGACATC
TCGAAGCTCG ACGGCACGCT GCAGACCGAC ATCTTCAAGG AGTACATCGC GCAGAAGGAG
TGGCTGTTCC CGCCGGAACC CCACCTGCGC CTGATCGGCG ACCTGATGGC CTACACCAAC
GCCGAGATCC CGCGCTACAA GCCGCTGTCG GTGTCCGGCT ACCACATCCG TGAGGCCGGT
TCGACCGCCG CTCAGGAGCT CGCGTTCACC ATCGCCGACG GGTTCGGTTA CGTCGAGCTG
GGCCTGTCGC GCGGTCTCGA CGTCAACACC TTCGCGCCCG GACTGTCGTT CTTCTTCGAC
TCGCACATCG ACTTCTTCGA GGAGATCGCC AAGTTCCGCG CCGCCCGCCG CATCTGGGCG
CGCTGGATGC GCGACGTCTA CGGCGCCACC AGTGAACGGG CGCAGTGGAT GCGTTTCCAC
ACCCAGACCG CGGGTGTGTC GCTGACGGCT CAGCAGCCCA CCAACAACGT GGTCCGCACC
GCCGTCGAAG CGCTCGCGGC CGTCCTGGGC GGCACCAACT CGTTGCACAC CAACGCTTTG
GACGAGACCC TGGCCCTGCC GACCGACGAG ACCGCCGAGA TCGCGCTGCG CACCCAGACC
GTCCTGATGG AGGAAACCGG CATCACCAAC GTGGCCGACC CGCTGGGCGG CTCCTGGTAC
GTCGAAGCCC TCACCGACCG CATCGAGGCT GAGGCCGAGG CGATCTTCAC CCAGATCCTC
GCCCTGGGCG GCGAATCCGA CGGCTCGACG GCGGGCCAGA CCGCCCGCGA GGCCATGGGC
ACCGGCCGCC ACGAGATCGG CCCGGTCACC TCGGGCATCC TGCGCGGCAT CGAGGAGGGC
TGGTTCACGG CGGGAATCGC CGAGGCCGCC TTCACCTACC AGCAGCAACT CGAACGCGGC
GAGAAGAAGA TCGTCGGCGT CAACTGCCAC ACCGAGACCG TGGCCAAGGA GCTGGAGATC
CTGCGCATCT CCGGCGACGT GGAACGCGAA CAGGTCGCGG CACTGGCCGA CCGCCGCTCC
AACCGCGACA AGGACACCGT CGACGCGGCC CTCAACCGGA TGGTCCAGGT CTCCCGCACC
GACGACAACA TCATCCCCGC GATGATGGAC GCCGTCCGCG TCGAGGCCAC CCTCGGCGAG
ATCTGCGACG CCCTGCGCGC CGAGTGGGGC GAGTACCGCG AACCCGCGCG GTTCTAG
|
|---|
| Protein sequence | MDANDISAGR KRWQERYDAA RKRDADFTTL SGLEVEPAYG PAEGSTDPRL GRIGWPGEFP
FTRGLYPTGY RGRAWTIRQF AGFGNAVQTN ERYKMLLKSG GGGLSVAFDM PTLMGRDSDD
PQSLGEVGHC GVAIDSAADM DVLFGGIPLA DVTTSMTISG PAVPVFCMYL ASAERQGADI
SKLDGTLQTD IFKEYIAQKE WLFPPEPHLR LIGDLMAYTN AEIPRYKPLS VSGYHIREAG
STAAQELAFT IADGFGYVEL GLSRGLDVNT FAPGLSFFFD SHIDFFEEIA KFRAARRIWA
RWMRDVYGAT SERAQWMRFH TQTAGVSLTA QQPTNNVVRT AVEALAAVLG GTNSLHTNAL
DETLALPTDE TAEIALRTQT VLMEETGITN VADPLGGSWY VEALTDRIEA EAEAIFTQIL
ALGGESDGST AGQTAREAMG TGRHEIGPVT SGILRGIEEG WFTAGIAEAA FTYQQQLERG
EKKIVGVNCH TETVAKELEI LRISGDVERE QVAALADRRS NRDKDTVDAA LNRMVQVSRT
DDNIIPAMMD AVRVEATLGE ICDALRAEWG EYREPARF
|
|---|
| |