Gene Snas_1217 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSnas_1217 
Symbol 
ID8882403 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStackebrandtia nassauensis DSM 44728 
KingdomBacteria 
Replicon accessionNC_013947 
Strand
Start bp1290845 
End bp1291882 
Gene Length1038 bp 
Protein Length345 aa 
Translation table11 
GC content67% 
IMG OID 
ProductDNA-directed RNA polymerase subunit alpha 
Protein accessionYP_003510020 
Protein GI291298742 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0300236 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTCATCA CTCAGCGTCC GACTCTCAGC GAAGAGTCGC TCTCGGACAC ACGGTCCCGG 
TTCTCCATCG AGCCGCTGGA GCCGGGTTTC GGTTACACGC TCGGCAACTC GCTGCGGCGT
ACCCTGCTGT CGTCCATTCC GGGCGCGGCG GTCACCTCGA TCAAGATCGA CGGTGTCCTG
CACGAGTTCA CCACCATCCC CGGCGCCAAA GAGGACGTCG TGGAGCTGGT GCTCAACGTC
AAGCAGCTGT GCGTCAGCTC CGAGCTGGAC GAGCCGGTCA CCATGTACCT GCGCAAGCAG
GGCCCCGGCG ACGTCACCGC GGGCGACATT CAGCCGCCGT CGGGCGTCAC CGTCCACAAC
CCGGAACTGA AGCTGGCCAC GCTCAACGGC AAGGGCCGCC TCGACATGGA GCTCATCGTC
GAGCGGGGCC GCGGTTACGT CTCGGCCGCC CAGAACAAGC AGGCCGGTGC CGGTATCGGC
CGGATCCCGG TCGACTCGAT CTACTCGCCC GTGGTGAAGG TCAGCTACCG GGTCGAGGCC
ACCCGTGTCG AGCAGCGCAC CGACTTCGAC AAGCTCATCA TCGACGTGGA GACCAAGCCG
TCCACCGGCC CGCGCACCGC GCTGGCCTCG GCCGGTTCCA CCCTGGTGGA ACTGTTCGGT
CTGTACCGCG AGCTGGACTC CGCCGCCGAG GGCATCGACG TGGGTCCGTC CCCGGCCGAC
GCGCAGCTGG CCGCCGATCT GGCGCTGCCG ATCGAGGAGC TGGAGCTGAC CGTCCGGTCG
TACAACTGCC TCAAGCGCGA GGGCGTCGAC CAGGTCGGCG AGCTCATCAA CCGCACCGAG
GCCGACCTGC TGGACATCCG CAACTTCGGT CAGAAGTCCA TCGACGAGGT CAAGATGAAG
CTGGCCGGTC TGGGCCTGGC GCTGAAGGAC TCCCCGGGCA CCTTCGACCC GGCCGAGGCC
GCTGCCGCCT ACGACGACGG TGAGTACGAC GAATTCGACG ACGACGGAGA AGAGCTCCGC
GAAACCGAAC AGCTGTAG
 
Protein sequence
MLITQRPTLS EESLSDTRSR FSIEPLEPGF GYTLGNSLRR TLLSSIPGAA VTSIKIDGVL 
HEFTTIPGAK EDVVELVLNV KQLCVSSELD EPVTMYLRKQ GPGDVTAGDI QPPSGVTVHN
PELKLATLNG KGRLDMELIV ERGRGYVSAA QNKQAGAGIG RIPVDSIYSP VVKVSYRVEA
TRVEQRTDFD KLIIDVETKP STGPRTALAS AGSTLVELFG LYRELDSAAE GIDVGPSPAD
AQLAADLALP IEELELTVRS YNCLKREGVD QVGELINRTE ADLLDIRNFG QKSIDEVKMK
LAGLGLALKD SPGTFDPAEA AAAYDDGEYD EFDDDGEELR ETEQL