Gene Snas_1176 details

Gene Information

• Locus tag: Snas_1176
• ID: 8882362
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Stackebrandtia nassauensis DSM 44728
• Kingdom: Bacteria
• Replicon accession: NC_013947
• Strand: +
• Start bp: 1260234
• End bp: 1263662
• Gene Length: 3429 bp
• Protein Length: 1142 aa
• Translation table: 11
• GC content: 66%
• Product: DNA-directed RNA polymerase subunit beta
• Protein accession: YP_003509979
• Protein GI: 291298701

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 14
• Fosmid unclonability p-value: 0.0450888
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

TTGGCAGCTT CCCGCCCTGC GAAGACCAGC AACCAGAGCG CGCTCGCTCC CAACCGAATC 
TCGTTCGGGC GCATCACCGA ACATCTTGAG GTTCCCAACC TGCTTGCCCT GCAGACCGAC 
TCCTTCGACT GGCTGGTGGG CAACGATGCC TACCGTGCCC GTACCGAAGC GGGGGCGACC 
TGTGGGCTGG ACGACATTCT CGAAGAGATC AGCCCGATCG AGGACTTTTC GGGAACCATG 
TCCCTTTCCT TCTCCAACCC TCGCTTCGAC GAGGTGAAGG CTCCCATCGA GGAGTGCAAG 
GAGAAGGACC TCACCTACTG CGCTCCGTTG TTCGTGACCG CGGAGTTCAT CAACCACAAC 
ACCGGCGAGA TCAAGTCGCA GACGGTGTTC ATGGGCGACT TCCCGATGAT GACGCCCAAG 
GGCACCTTCA TCATCAACGG CACCGAGCGG GTCGTCGTCT CGCAGCTGGT GCGTTCGCCG 
GGCGTCTACT TCGACAAGCA GCCCGACAAG ACCAGTGACC GCGACCTGTC CAGCGTCAAG 
GTCATCCCCG GCCGGGGCGC CTGGCTGGAG TTCGACATCG ACAAGCGCGA GACCGCGGGC 
GTGCGCATCG ACCGCAAGCG CCGCCAGGCC GTCACCGTGC TGTTGAAGGC CATCGGCTGG 
ACCAACGACC AGATCCGGGA ACGCTTCGGC TGGTCCGAGA TCATGATGGC CACGCTGGAG 
AAGGACCACG TCGGCAGCCA GGACGAGGCG CTGCTCGACA TCTACCGCAA ACTGCGTCCC 
GGCGAGCCCC CCACGAAGGA GAACGCCGAG ACCCTGCTGG ACAACCTGTT CTTCAACCCG 
AAGCGCTACG ACCTGGCCAA GGTGGGGCGC TACCAGGTCA ACAAGAAGTT CGGGCTGTCG 
ACGCCGATCA GCACCGGCGT GCTCACCGAG GCCGACCTGG TCTCGATCAT CGAGTACCTG 
TGCCGGCTGC AGAACGGCGA GGACGGTTAC GACCGCGACG ACATCGACCA CTTCGGCAAC 
CGGCGCATCC GCACCGTGGG CGAACTGATC CAGAACCAGG TTCGGGTCGG TCTGTCCCGT 
ATGGAGCGTG TGGTCCGGGA GCGGATGACG ACCCAGGACG TCGAGGCGAT CACGCCGCAG 
ACCCTGATCA ACATCCGTCC CGTCGTGGCC GCGATCCGGG AGTTCTTCGG CACCTCGCAG 
CTGTCGCAGT TCATGGACCA GGTCAACCCG ATCGCGGGTC TGACCCACCG CCGCCGCCTG 
AACGCTCTGG GCCCGGGTGG TCTGTCCCGC GACCGCGCCG CCATGGAAGT CCGAGACGTC 
CACCCGTCGC ACTACGGCCG GATGTGTCCG ATCGAGACGC CGGAAGGCCC GAACATCGGC 
CTCATCGGCG CCCTGGCGGC ATTCGCCCGG GTCAACCCCT TCGGTTTCAT CGAGACCCCG 
TACCGCAGGA TCGACAACGG CCGGGTCACC GACGACGTGA AGTACCTGAC CGCTGACGAG 
GAGGACCGCT GCGTCATCGC GCAGGCGAAC ACGAAGCTCA ACGATGACGG CACCTTCGCC 
GAGGAGCGGA TCCTGGTGCG TCGCAAGGGC GGCGAGATGG AACTCGTCGG GCACGACGCC 
GTCGACTACA TGGACGTCTC GCCGCGCCAG ATGACCTCCG TGGCCACCGC CATGGTGCCG 
TTCCTGGAGC ACGACGACGC CAACCGCGCC CTGATGGGCG CCAACATGCA GCGTCAGGCC 
GTCCCGCTGA TCAAGACCCA GTCGCCGTTC GTCGGCACCG GCATGGAGTA CCGTGCCGCC 
GTCGACGCCG GTGACGTGGT GGTCAACGAG GTCGCCGGTG TCGCCGAGGA CGTGTGCGCC 
GACTACATCA CCGTGCACCA GGACGACGGC TTCCGCCGCA CCTACCTGCT GCACAAGTTC 
CACCGCTCCA ACGCGGGCAC CTGCGTCAAC CAGATCCCCG TCATCAACGA GGGCGACCGG 
GTCGAGGCCG GACAGGTCAT GGCCGACGGG CCGTGCACCG ACAAGGGCGA GATGGCGCTG 
GGCAAGAACC TGCTGGTGGC GTTCATGCCG TGGGAGGGCC AGAACTACGA GGACGCGATC 
ATCCTGTCCT CGCGGCTGGT CCAGGAGGAC GTCCTGACGT CCATCCACAT CGACGAGCAC 
GAGGTCGACG CCCGCGACAC CAAGCTGGGT CCGGAGGAGA TCACCCGGGA GATCCCGAAC 
GTCTCCGAGG AGATGCTGTC CGACCTCGAC GAGCGCGGCA TCATCCGCAT CGGCGCCGAG 
GTCCGCGACG GCGACATCCT GGTCGGCAAG GTCACCCCCA AGGGTGAGAC CGAGCTGACC 
CCGGAGGAGC GGCTGCTGCG CGCCATCTTC GGTGAGAAGG CCCGCGAGGT CCGCGACACC 
TCCCTGAAGG TGCCGCACGG CGAGAGCGGA ACCGTCATCG GTGTGCGCAC CTTCAGCCGC 
GACGACGGCG ACGAACTGTC GCCCGGCGTC AACGAGCTGG TGCGGGTGTA CATCGCCCAG 
AAGCGCAAGA TCTCCGACGG TGACAAGCTG GCCGGTCGTC ACGGCAACAA GGGCGTGATC 
TCCAAGATCG TGCCCGCCGA GGACATGCCG TTCCTGCCGG ACGGCACCCC CGTCGACGTC 
GTCCTCAACC CGCTGGGTGT GCCCGGCCGA ATGAACATCG GTCAGGTACT GGAACTGCAC 
CTGGGCTGGA TCGCCAAGTC CGGGTGGCAG CTGGCGGGCG ACGCCGAGGG CTGGCAGAAA 
TCACTGAAGG CCATCGGCGC CGAGGAGGCT CCGCCGGACT CGACGGTGGC CACCCCGGTG 
TTCGACGGCG TCCACCTCGA AGAGATCACC GGGCTGCTGG AGTCGGCCCG TCCCAACCGG 
GACGGCGACC GCATGGTCGG CACCGACGGC AAGGCCAAGC TGTTCGACGG CCGCACCGGC 
GAGCCGTTCC CGGGCCCGAT CTCGGTGGGC TACATGTACA TCCTGAAACT GAACCACCTG 
GTCGACGACA AGATCCACGC CCGTTCGACC GGCCCGTACT CGATGATCAC CCAGCAGCCG 
CTCGGTGGTA AGGCGCAGTT CGGTGGACAG CGGTTCGGCG AGATGGAGTG CTGGGCCATG 
CAGGCCTACG GCGCGTCCTA CGCGTTGCAG GAGTTGCTGA CCATCAAGTC CGACGACATC 
CTCGGCCGCG TCAAGGTGTA CGAAGCCGTC GTCAAGGGCG AGAACATTCC CGAGCCGGGG 
ATCCCGGAGT CGTTCAAGGT GCTGCTCAAG GAACTGCAGT CGCTGTGCCT CAACGTGGAG 
GTGCTGTCGA GTGACGGTAC CGCCGTCGAG CTGCGCGACA GTGACGACGA GGTGTTCCGC 
GCCGCCGAAG AACTCGGCAT CGACCTGTCC CGGCACGAGC CGAGCAGCGT CGATCTCGAA 
GGAGCGTAA 

 

Protein sequence

MAASRPAKTS NQSALAPNRI SFGRITEHLE VPNLLALQTD SFDWLVGNDA YRARTEAGAT 
CGLDDILEEI SPIEDFSGTM SLSFSNPRFD EVKAPIEECK EKDLTYCAPL FVTAEFINHN 
TGEIKSQTVF MGDFPMMTPK GTFIINGTER VVVSQLVRSP GVYFDKQPDK TSDRDLSSVK 
VIPGRGAWLE FDIDKRETAG VRIDRKRRQA VTVLLKAIGW TNDQIRERFG WSEIMMATLE 
KDHVGSQDEA LLDIYRKLRP GEPPTKENAE TLLDNLFFNP KRYDLAKVGR YQVNKKFGLS 
TPISTGVLTE ADLVSIIEYL CRLQNGEDGY DRDDIDHFGN RRIRTVGELI QNQVRVGLSR 
MERVVRERMT TQDVEAITPQ TLINIRPVVA AIREFFGTSQ LSQFMDQVNP IAGLTHRRRL 
NALGPGGLSR DRAAMEVRDV HPSHYGRMCP IETPEGPNIG LIGALAAFAR VNPFGFIETP 
YRRIDNGRVT DDVKYLTADE EDRCVIAQAN TKLNDDGTFA EERILVRRKG GEMELVGHDA 
VDYMDVSPRQ MTSVATAMVP FLEHDDANRA LMGANMQRQA VPLIKTQSPF VGTGMEYRAA 
VDAGDVVVNE VAGVAEDVCA DYITVHQDDG FRRTYLLHKF HRSNAGTCVN QIPVINEGDR 
VEAGQVMADG PCTDKGEMAL GKNLLVAFMP WEGQNYEDAI ILSSRLVQED VLTSIHIDEH 
EVDARDTKLG PEEITREIPN VSEEMLSDLD ERGIIRIGAE VRDGDILVGK VTPKGETELT 
PEERLLRAIF GEKAREVRDT SLKVPHGESG TVIGVRTFSR DDGDELSPGV NELVRVYIAQ 
KRKISDGDKL AGRHGNKGVI SKIVPAEDMP FLPDGTPVDV VLNPLGVPGR MNIGQVLELH 
LGWIAKSGWQ LAGDAEGWQK SLKAIGAEEA PPDSTVATPV FDGVHLEEIT GLLESARPNR 
DGDRMVGTDG KAKLFDGRTG EPFPGPISVG YMYILKLNHL VDDKIHARST GPYSMITQQP 
LGGKAQFGGQ RFGEMECWAM QAYGASYALQ ELLTIKSDDI LGRVKVYEAV VKGENIPEPG 
IPESFKVLLK ELQSLCLNVE VLSSDGTAVE LRDSDDEVFR AAEELGIDLS RHEPSSVDLE 
GA