| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Snas_1171 |
|---|
| Symbol | |
|---|
| ID | 8882357 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stackebrandtia nassauensis DSM 44728 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013947 |
|---|
| Strand | + |
|---|
| Start bp | 1254926 |
|---|
| End bp | 1256035 |
|---|
| Gene Length | 1110 bp |
|---|
| Protein Length | 369 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | |
|---|
| Product | virulence factor Mce family protein |
|---|
| Protein accession | YP_003509974 |
|---|
| Protein GI | 291298696 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.919732 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGACGCT TCATGCGCAA CCCGGTGACG GTGCTGTTCG TCGTCGTCGT CCTGGCCGCC
ACCGCCTTCT TCACCTGGCA GGCGCTGTCC AACAACGGCC GCCACGTCAC CGCCGAGTTC
ACCCGCGCCG TCGGCGTGTA CGAGGGCTCG GACGTGCGGG TGCTGGGCGT CAAGGTCGGT
GAGATCACCT CGGTGCAGCC CAAGGGGAAG ATCGTCAAGG TCGGGCTGCG CATCGACGAG
GACTACCCGA TCCCCGACGA CGCCAAGGCC ATCGTGATCC CGCCCAGCAT CGTCGCCGAC
CGCTACGTCC AGCTGGCCCC CGCCTACACC GGCGGCGCCC GGCTGGAGGG CGGCACGACA
CTGGGCCCCG ACCGCACCGT GGTCCCGCTG GAACTCGACG AGGTCTACGA GTCGCTGGAC
GAGTTCGCCG GAGCCCTCGG TGAGGACGAG TCGCTGGGCG AGGCCATCGC GACCGCCAAG
AAGAACCTCA AGGGCAACGG CAAGGACCTC GGCGAGACGC TCGACAACCT GGGCGAGGTC
TCCGAGGTCC TCAACGAGCA CTCCGACGAC ATCTGGGGCA CCGTCGACAA CCTGGCCGAG
TTCACCAAGA TGCTGGCCGA GTCCGACGCC GAGGTCGAGG TGTTCAACGA ACAGCTCGCC
GAGGTCTCCA CCCAGCTGTC CGACGAACGC GGCACCCTGT CCAAGGCGCT GCGCGAGTTG
TCGGTGGCGC TGGCCGACAT CGGCAGGTTC GTCGACAAGA ACGCCGACAA GCTCACCAAG
TCGGTGGAGA AGCTGTCCGA CCTGTCGGGT GTCTTCGCCC GGCAGCAGGA GTCGCTGATC
AACATCCTCG ACTACGCGCC GGTCGCGCTG ACCAACCTCG ACCTGGCCTA CAACTCCCGC
TCGGGAACCA TGGACACCCG CGACGACCTG CTGGGCCCCT ACGACCCGGC CGGGTTCCTG
TGCGCGAACA TCGCCACCGC GGTGGCACTG GAGGACGTCC CGGCCGCCTG CTTCGACCTG
GCCGACTCGC TGGCGGAGGG CGGAGCCGAG ATGCCCAAGG AGCTCAAGTC GCTGGTCGGC
AAGGGCGAGT CCATCCTGGG GGACACATGA
|
|---|
| Protein sequence | MRRFMRNPVT VLFVVVVLAA TAFFTWQALS NNGRHVTAEF TRAVGVYEGS DVRVLGVKVG
EITSVQPKGK IVKVGLRIDE DYPIPDDAKA IVIPPSIVAD RYVQLAPAYT GGARLEGGTT
LGPDRTVVPL ELDEVYESLD EFAGALGEDE SLGEAIATAK KNLKGNGKDL GETLDNLGEV
SEVLNEHSDD IWGTVDNLAE FTKMLAESDA EVEVFNEQLA EVSTQLSDER GTLSKALREL
SVALADIGRF VDKNADKLTK SVEKLSDLSG VFARQQESLI NILDYAPVAL TNLDLAYNSR
SGTMDTRDDL LGPYDPAGFL CANIATAVAL EDVPAACFDL ADSLAEGGAE MPKELKSLVG
KGESILGDT
|
|---|
| |