| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Snas_0997 |
|---|
| Symbol | |
|---|
| ID | 8882182 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stackebrandtia nassauensis DSM 44728 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013947 |
|---|
| Strand | - |
|---|
| Start bp | 1056325 |
|---|
| End bp | 1057944 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | |
|---|
| Product | Berberine/berberine domain-containing protein |
|---|
| Protein accession | YP_003509800 |
|---|
| Protein GI | 291298522 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.367258 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.977331 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCAGC TGAATCGGCG CCGGTTGCTG ACCGGCACCG CTGTCGCCGG TGGTTTCGCC
GCCGGAATCG GGGTCTCCGG CCTGGGATCG CTGGCCCTGG CCGACCCGCC CGACAAGTGC
TTCGAACCCC CGAAGGCCGT GACCGTCGGC AAGGACGACC CCCGCTACCC GCACCTGACC
TCCCGAGGCA TGAACGCCCG GTTCACCGGC GAACCCGACA ACGTCCACAT AGTCACCACC
ACCGAGCAGG TGGTCAAGGC CGTCACCGAA GCCGTCGCGG CGGGAAAGCG CGTCTCGGTT
CGCAGCGGTG GACACTGTTT CGAGGACTTC GTCGACTCGG CCGACATCGA GACCGTCATC
GACCTGTCCA CCATGACGAA CCTGTACTTC GACGACGAGA AACGCGCCTT CGCCATCGAA
CCGGGCCTGC GGCTGTCGGA GGTGTACCGG CGGCTGTACC TGGGCTGGGG CGTGACGATC
CCGGCCGGAA GCTGCGTCGA GGTCGGCGTC GGCGGCCACA TCCTCGGCGG CGGCTACGGC
GCCCTGGCCC GCCGGGACGG ACTGGTCGTC GACCACCTGT ACGCCGTGGA AGTGGTGGTG
GTCGGCAAGT CCGGCAAGGC CAAGGCCGTG GTGGCCACAA GGGAGAAGGA CGACCCGAAC
CGGGACCTGT GGTGGGCGCA CACCGGCGGA GGCGGCGGCA ACTTCGGCAT CGTGACGCGC
TACTGGCTCC GCTCCCCCAA TGCCGAAAGC AAGGACCCGT CGAAGCTGCT CCCCAAGCCG
CCCAAGGAGT TGCTGGGCTT CGGCCTCGTC TGGGACTGGT CCACACTCGA CGAGAAGTCC
TACGCGCGGC TGGTGCGCAA CCACGGCGAA TGGCACACCG CCAACAGCGA ACCCGGCACC
CGTTTCGCGG GCCTGCACTC CGTGCTGATG CTCAACGAAC CCAGCGCCGC GCCGATCATG
CTGGTGGGCA CCATTCACGG CGACGACGCC GAGAACCTCC TCGACGAGTA CGCCGCCGCG
ATCACCGAAG GCGTTTCGGC GCCGCCCCAA CGCGACGAGA GCCGCGAGCC CTGGCTGGAC
GCCACCCTGG CGGCGAACCT GGACGAGACC GGCGGGCGAT CCCGCGTCAA GTGCAAGGCC
GGATACCTGC GCCGCGGCTG GAGCGACGAA CAGATCGCGC TGACCTACGA CGTCCTCAAC
GAGGGCCAGA CCTCGAAGGA CTCGGGCCTG GCGATCTGGC TGGTCGCCTA CGGCGGCAAG
GTCAACGACG TGAAGCCGAA CGCGACGGCC ACGGCGCAGC GCGACTCGGT GCTCAAGGCG
ATCTACATGA CGGGCTGGTC CGATCCCGAT CAGGACAAGG CGAACCTGAA ACGGGTCCGT
CGGTTGTACT CCGAGATCTA CGCAACCGGA GGCGGAGTCC CGGCCCCCGA CGACGACAAC
GACGGCAGCT TCATCAACTA CGCCGACGCC GACCTGGCCG ACGAGGACCT CAACACCTCC
GGCGTCGCCT GGCACACCTT GTATTACAAG GACAACTACC CGAGGCTGCG CAAGGCCAAG
GCCAAGTGGG ACCCACGCGA CGTCTTCACG CACAAGCTGG GCATTCGACC CGCCGATTAG
|
|---|
| Protein sequence | MNQLNRRRLL TGTAVAGGFA AGIGVSGLGS LALADPPDKC FEPPKAVTVG KDDPRYPHLT
SRGMNARFTG EPDNVHIVTT TEQVVKAVTE AVAAGKRVSV RSGGHCFEDF VDSADIETVI
DLSTMTNLYF DDEKRAFAIE PGLRLSEVYR RLYLGWGVTI PAGSCVEVGV GGHILGGGYG
ALARRDGLVV DHLYAVEVVV VGKSGKAKAV VATREKDDPN RDLWWAHTGG GGGNFGIVTR
YWLRSPNAES KDPSKLLPKP PKELLGFGLV WDWSTLDEKS YARLVRNHGE WHTANSEPGT
RFAGLHSVLM LNEPSAAPIM LVGTIHGDDA ENLLDEYAAA ITEGVSAPPQ RDESREPWLD
ATLAANLDET GGRSRVKCKA GYLRRGWSDE QIALTYDVLN EGQTSKDSGL AIWLVAYGGK
VNDVKPNATA TAQRDSVLKA IYMTGWSDPD QDKANLKRVR RLYSEIYATG GGVPAPDDDN
DGSFINYADA DLADEDLNTS GVAWHTLYYK DNYPRLRKAK AKWDPRDVFT HKLGIRPAD
|
|---|
| |