| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Snas_0858 |
|---|
| Symbol | |
|---|
| ID | 8882042 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stackebrandtia nassauensis DSM 44728 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013947 |
|---|
| Strand | + |
|---|
| Start bp | 908496 |
|---|
| End bp | 909854 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | |
|---|
| Product | virulence factor Mce family protein |
|---|
| Protein accession | YP_003509662 |
|---|
| Protein GI | 291298384 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAGC GAATCGCCGG TCTCGGCTTT CTTCTCGTCC TCGCGGCGCT GCTGGGTCTG
TGCGTGGCGT CCTATATGAA ACTGTTCAGC CCCAAGGTGG ACGTGACCGT GCAGGCCGCC
ACGGCGGGAC TGCAGATGTC CCGGGGCGCC GACGTGAAGC TGCACGGCGT GCTGGTCGGC
GAGGTCCGCG ACATCAACTC CACAGGCGAC GGCGCCGAGC TGGATGTGGC GCTGGACCCC
GATTCCACCG CCTCGATCCC GGCCGGGGTC ACCGCCCGGC TGCTGCCCAA GACGCTGTTC
GGCGAGAAGT ACGTCGAACT GATCGCCCCC AAGTCCGACA CCGGTGGTTC GATCCAGCCC
AACACCGTCG TCAAGGAGGA CAAGTCCAAG GAGGCCGTCG AACTGAACGA CGTCCTGGAC
GGGGCGCTGC CGCTGCTGCG GGCCGTCCCG CCGGAGAAGC TGTCGGTGAC GCTGTCGGCC
ATCGCCGGCG CGCTCGACGG CCGTGGTGAC GAACTGGGCG ACACGATCGT GAAGCTCGGC
GACATCGTCC GCACCCTGAA CAAGGAGATG CCGACCATCG AGGCCGACAT CGACGAGCTG
GCCAAGGTGC TGGACAACTA CCGGGGCGCG CTGCCCGACC TGACGAAGGT CCTGGAGAAC
CTGACGGTCA CCAACAAGAC CATCACCGAC CAGGAGGACG AGCTGCAGGC GATGTGGATG
TCGACGCAGG ACTTCAGCGA CGACACCCGG GTGTTCCTGG ACCGCTACCA GGGACGGCTG
ATCCAGTTCG GCGAGGTCAC GCAGCCGTTC ATCGAGCTGC TGGCGACCTA CTCGCCGGAG
TATCCGTGCC TGTTCCAGGG CCTGACCGAG CTTCAGCCCG ACATCGAGGA GGCCTTCTCG
GGCGGGCGGC TGCACATCAC GCTGGAGATC ACCCAGAACA ACGGCAAGTA CGAGTCCGGC
CGCGACGAAC CCGAGTGGAC CAGCCAGTAC GGGCCCAACT GCCGGGGCCT GCCGGAGGGC
AACTCGGAGG CCGCCGAGAA CCAGTTCGGC AACGGCTACG ACTACGACGG TGAGCGCAGC
AACCTGCCGA TCGAGATCCC GGGGCTGACC GACGCCCCGG CGCAGGAAGA CGACGAGGGC
ACCAACGCCG AGAACAAGGA CGATGAGGAC GAGGACGGTC CCGGCGTCGA GCTGCCGTTC
GATCCGATGA TGGGCTACGC CGGTACCGAG GAGGAACAGT CGGTGTTCAC GCCGATGGTG
GCCGCCTCGA CCGGTTCCGA CGTCACCGAC CTCAACGGCG ACCTGGTCTC GTTGCTGTAC
GGACCGATCT TCCGGGGTGC CACAATTTCT GCCCGTTAG
|
|---|
| Protein sequence | MKQRIAGLGF LLVLAALLGL CVASYMKLFS PKVDVTVQAA TAGLQMSRGA DVKLHGVLVG
EVRDINSTGD GAELDVALDP DSTASIPAGV TARLLPKTLF GEKYVELIAP KSDTGGSIQP
NTVVKEDKSK EAVELNDVLD GALPLLRAVP PEKLSVTLSA IAGALDGRGD ELGDTIVKLG
DIVRTLNKEM PTIEADIDEL AKVLDNYRGA LPDLTKVLEN LTVTNKTITD QEDELQAMWM
STQDFSDDTR VFLDRYQGRL IQFGEVTQPF IELLATYSPE YPCLFQGLTE LQPDIEEAFS
GGRLHITLEI TQNNGKYESG RDEPEWTSQY GPNCRGLPEG NSEAAENQFG NGYDYDGERS
NLPIEIPGLT DAPAQEDDEG TNAENKDDED EDGPGVELPF DPMMGYAGTE EEQSVFTPMV
AASTGSDVTD LNGDLVSLLY GPIFRGATIS AR
|
|---|
| |