| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mrub_3019 |
|---|
| Symbol | |
|---|
| ID | 8881138 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Meiothermus ruber DSM 1279 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013946 |
|---|
| Strand | - |
|---|
| Start bp | 3058505 |
|---|
| End bp | 3060055 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | |
|---|
| Product | Cse1 family CRISPR-associated protein |
|---|
| Protein accession | YP_003508783 |
|---|
| Protein GI | 291297385 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000306277 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.0835975 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCCCACGT TTAATCTAAT AACCCAGCCC TGGATTCCCG TGCGAACGGG AAACGAGCTT
TTGCTTGTGA GCCTCGAGCA GGCCCTGCTC GAGGCTCACA AGTTCGAGCG CATCGAAGAC
CCCAGCCCGC TGGTGACGGC GGCCTTGCAC CGCTTGCTGC TGGCGGTGCT GCACCGGGCG
CTGGAGGGCC CCGCCGATGC CTACGAGGCG GCCGAGTGGT TCGAAGAGGG GTTCGATCGC
GGAAAGATTC AGACCTATCT GAGTAAGTAC CGGGATCGCT TCGACCTGTT CCACCCCGAG
CGGCCCTTCT ACCAGGTGCC CGACTTCAGT CTCGAGCGCT CCTGCCGCTC CTGGACGGTG
CTGGCCCCCG AACTCAACTC CGACAACAAC AAGGTGCTCT TCGACCACAC CGTCACCTCG
AGGCCCCGCC CCCTCCTGCC CGCCGAGGCC GCCCGGCTGT TGGTGGCCAA CCAGACCTTT
GCCCTTTCTG CAGGCAAGAG CGTGCTGTGC CACACCGCCA CGGCGCCGGT CGCGACGGCG
GCTCTGGCGC TGGTGCTGGG CGACAACCTC CACCAGACGC TGTGCCTGAA CCTAGTGGCC
TATCCCAAAA GGGAGCACGA GCACGATTTC GCCACCTGGG AGCAGGAGCC CCTGAAGGTT
GCCGACCTGG CGGACTGCGA GCGGGCCAGG GCCAGCGCCA AGGGCATCGT GCACCGCTAC
ACCTGGCTCG CGCGCGCGGT GCGCCTGCAC CCTGAGGAGG AAGATGGTCA GACTATCGTA
CGCTGGATCG CCTACGCCTC GGGGGTTCGC TACGAGGAGA GCCAGGTTCG GCGCGACCCG
ATGGTGGCGT TTCGCCCTGA CCCCAAAGAC CCCACCAGAG AGCGCCCCCT CGGCTTTAGC
GAGGGCCGGG CCTTGTGGCG CGACTTTGCC GCTTTGCTGC CCAAGCCCGG CTCGGCCCAG
GGGCTGGCCG TGGCCGACCA TGCCCGCAAC GTTTACCGCG CCCTGGGCCG CCATTTCAGG
CAGCGGGGCC TCCCCGTGAT GGTGGCGGGT CAGGCCAGTG ATCAGGCCAA GGTCGAACTC
TGGCGGGGGG AGATATACCG CCTGCCCGAG GCCATTTTGG GCGAGACCGA CCTGCGCGCT
TTTGTCGAGC AATGCCTGAA CGAAGCCGAA GTGATGGGAG AGGTTTTGAA TGGGGCTGCT
CGAGCCCTGG CCGCCGGGTT GCTGTCCATG GGGGATCGCA AGCCCCATAA AGACGACGTG
AGCAAGCTGG CCCGGAGCTT TCCTCACCAG GTGGCTTACT GGTCGGCGCT CGAGGGCCAT
TTCGCCGATT GGATAAGCCA GCTCGGCCCC GATTTCGAAA AGCAGCAGGC TCGGCTCGAG
CGGGCCTGGC GCGAGATTCT CCAGCGCGAG GCCCTGCAGG CCTGGCGGCT TGCTGCTTTG
GCCGCGGGGG ACGATGCCCG GGCTTTGCGG GCCGTTCACA AGGGCGAGGG CATTTTGCTG
GCCCATATCT ACAAACAAAA GGAGGTAGTG GGTGCAAAAG GAAGTCAGTA G
|
|---|
| Protein sequence | MPTFNLITQP WIPVRTGNEL LLVSLEQALL EAHKFERIED PSPLVTAALH RLLLAVLHRA
LEGPADAYEA AEWFEEGFDR GKIQTYLSKY RDRFDLFHPE RPFYQVPDFS LERSCRSWTV
LAPELNSDNN KVLFDHTVTS RPRPLLPAEA ARLLVANQTF ALSAGKSVLC HTATAPVATA
ALALVLGDNL HQTLCLNLVA YPKREHEHDF ATWEQEPLKV ADLADCERAR ASAKGIVHRY
TWLARAVRLH PEEEDGQTIV RWIAYASGVR YEESQVRRDP MVAFRPDPKD PTRERPLGFS
EGRALWRDFA ALLPKPGSAQ GLAVADHARN VYRALGRHFR QRGLPVMVAG QASDQAKVEL
WRGEIYRLPE AILGETDLRA FVEQCLNEAE VMGEVLNGAA RALAAGLLSM GDRKPHKDDV
SKLARSFPHQ VAYWSALEGH FADWISQLGP DFEKQQARLE RAWREILQRE ALQAWRLAAL
AAGDDARALR AVHKGEGILL AHIYKQKEVV GAKGSQ
|
|---|
| |