| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mrub_1831 |
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| Symbol | |
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| ID | 8879939 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Meiothermus ruber DSM 1279 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013946 |
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| Strand | - |
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| Start bp | 1882492 |
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| End bp | 1886253 |
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| Gene Length | 3762 bp |
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| Protein Length | 1253 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | |
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| Product | alpha amylase catalytic subunit |
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| Protein accession | YP_003507609 |
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| Protein GI | 291296211 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.944012 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCTACC GTCAGACCTG GCCGGGGGCC CGCGAATTCC ACGTTTCCAA AGAGGCGCGG
GATTTCTATC AGTTTGATCT GTCGCTGTTC TCGCTGAGCG GCAACGTCAT CCTGGCCGAC
TTTGAGGCGG CCCGACGCTT CGCCGAGGCC ATGAATGCCA AGCGCGACCT GCTGCGGCAC
CCCGAGCAGG CCGTGCACCC CAGCCAGATC AACGCCATGG GCCTGATTGA CGAGCTGCTG
CACCTCATCG TGCGGCAGTA CCTGGAAGCG CACCCCCACG CCATGCAGGA GGCCCTGGCG
GCCCTGAAGC GCAACCTGGG CCCCGATGCG GTAGAACAGG CCCTGCGCGC CTTTGCCGCC
CTCTTCCCCC CCATCCGGGT TTACCGGGGC GAGATCAGCC TGGACGAATA CCTGGCGGAT
ACCACCGAGG GCCGCTCCAA CCGGGAGATT CAGTTGGAGG AGATGCTCCT GTTGTGGATG
GCCAACGCCA ACCCGGCCTT CGCCCCATTC GCCGAGCTGT TCGATGATGA AACCCTCGAG
CGCACCACCG CCTACCTGCC CATCATCCAG AACCTGGAGA CCTTCTTCGA GGGCCAGCCG
GCCTTCGGCC AGAGCGGGCT TTCCCTTTTC AAAACCCTGC GGCTGCCGGC CCTGCAGCAC
CCCCATTCGC TGGAAGCCCA GCTCGAGTTT CTGCTACAGC GCTTTGGCGG CAGCCTGGGG
CGCTTCTACT ACCGGATGCT GGTTGGCCTC GACGTGATCC GCGAGGAAGG GCGCTCGTTT
GCCGCGCCGG TTCACTTTGA CGGGCCGGGC GGTGGGGGTG GGGGCGAAAG TGAGATGCTG
GACATCCGGC GGCTCCTCTC CGAGCCCGAA CCCGAGGCCT TCAGCCCCGA CCTGGACTGG
ATGCCGCGCT GCGTCCTGAT CGCCAAGAAC ACCTATGTCT GGCTGGATCA GCTCTCCAAA
AAATACCGCC GCGAGATCAG AACCCTCGAC CAGATTCCCG AGGAGGAGCT GGCCCAACTG
CAAAGCTGGG GGGTGACGGG CCTGTGGCTC ATTGGGCTTT GGGAGCGCAG CAAAGCCTCA
GCGCGCATCA AGCAGCGAAT GGGCAACCCC GAGGCCATCG CCTCGGCCTA CGCGCTGTAC
GACTATGTGA TTGCCAGAGA GCTGGGGGGT GAGGAGGCCC TCGAGGTGCT CCGGCAAAAA
GCCGCCCGTC ACGGCCTCCG CCTGGCCTCG GACATGGTGC CCAACCATGT GGGCATCGAC
GGGCGCTGGG TGATGGAGCA CCCCGACTGG TTTATCCAGC TTCCCTACCC GCCCTACCCC
AGCTACACCT TCAACGGGCC GGATCTGTCG TCCGACGAGC GGGTGGGCAT CTTCCTGGAA
GACCACTACT ACGACAAGAC CGACGCGGCG GTGGTGTTCA AATGGGTTAA TCGGCAGACC
GGCGAGGTGC GCTACATCTA CCACGGCAAC GACGGCACCG CCATGCCCTG GAACGACACC
GCCCAGCTCA ACTACCTGCT GCCCGAGGTG CGCGAGGCGG TGATCCAGGC CATCCTGCAC
GTGGCCCGGC AGTTTCCCAT CATCCGCTTC GACGCGGCCA TGACCCTGGC CAAGCGCCAC
GTCCAGCGGC TATGGTGGCC CGAGCCGGGG GGCTCGCCCT GGGGGGCCTC GGTGCCCAGC
CGGGCCGCCT TCGCCATGAG CAAAGAAGAC TTCGACCGGG CCATGCCCAG GGAGTTCTGG
CGCGAGGTGG TGGATCGGGT CGCGGTGGAG GCCCCCAACA CCCTGCTGCT GGCCGAGGCT
TTCTGGATGA TGGAGGGCTA TTTCGTGCGC ACCCTGGGTA TGCACCGGGT CTACAACTCG
GCCTTCATGA ACATGCTGCG CGACGAGAAA AACGCCGAGT ACCGGCAGAT TGTGAAAAAT
ACGCTCGAGT TCGAGCCGGA AATCCTCAAG CGCTTCGTCA ACTTCCTCAA CAACCCCGAC
GAAAAAACCG CCATCGAGCA GTTTGGCAAG GGCGACAAGT ACTTCGGGGT GATGACCCTG
TGCGCCACCC TGCCGGGCCT GCCCATGCTG GGCCACGGGC AGGTGGAGGG GCTCACCGAA
CGCTACGGCA TGGAGTACCG CCGGGCCTAC TACGACGAGG CCCCCGACGA GGGCCTGATC
GCCTACCACC AGCAGCAGAT CTTTCCCTTG CTCAAAAAGC GCCACCTGTT TGCTGAAGTA
GAGAATTTCG TGTTCTACGA CGCCCAGACC GGCGACGCAG TCAACGAGGA TGTGTTTGTT
TATTCAAACC GCGCGGGCAG CGAGCGGGCT TTGGTGGTGT ACCACAACAA AAACGCCGAG
ACCCAGGTCT GGGTGCGGCA GTCGGTGGCC CAGCCCTTCA AAACCGCACA GGGCCGCGAG
ACCCGGCGGG TGGGGCTGGG GCAGGGTCTG CAGCTCAGCT ACGACGCCCG CACCTTTAGC
ATCTTCCGCG ACCTGGTGAC GGGCCTCGAG CACCTGCACA GCAATCAGGC CCTGCACGAG
CAGGGGCTCT ACCTGGAGCT GGGCCCCTAC CAGCGCAAGG TGTTCCTGGA CTGGCGCGAG
GTCTACGACG CCGACGGCAC CTACGCCCGC CTGGCCCAGA TGCTCTCCGG GCGCGGCGTT
CCCAGCGTGG ACGAGGCCCG GCAGGAGCTC TGGCTGGGGC CCATCCTGCA ACCTTTCCGC
GCGCTGGTGA GCCCGGCCCT CTTCCGCAGG CTGCTGGCCG CTCGGGGCGG GCTGGACGGG
GCTTTGCGGG AAGAGGTACA GGAGAAACTT CTGGCGCTGT ACAGGGGCAT CGAGGCGCAC
GTCGAGGGCA ACCTGGCCTT GCTGCCGGTA CAGCAGGTGC TGGATGGCCT GGCGGGGGTG
CTCGAGGCCG GCCTGCACGA CGATCTAGTG ACCGGCGGCG CGCTTTTGGG CTGGGCCTTC
ACCCGCGGCC TGGGGAGCCC GGCCCGCCTG GAGGAGTGGC GCCTGGGGCG GGTGCTGGAG
CAGACCCTGG CTGAGCTGGG CCTGGAGGAG GCCGCCGCCC GGCGTGCGGT GGGCCTCACC
CGGCTGCTGC TGGCCCAGAG TGAGCTGGCG CTGAAGCCAG GCCGCCTACC CCAGCAGATG
CCCAGGCTAC TGCAAGACCC CGCCGTGCAA AGTTTTTTAG GGGTCAACCG CTTCGAGGGA
CGGGTCTACT TCAACCGCGA GGCCCATCAG GCCTGGCTCG AGGGCCTGGG GAAGCTGGGG
CAGGCCCTGT ACCTAGCACA GAGAAAACCT GCGGCCCAGC ACGAGAAGCT GCGCACGACC
TGGCAAACCC TTCAGTACAA GCTCGAGCAG GCCGCCCTGG ACTCGGGTTT TACGGTGGAC
GGGTATCTGC GAGCCATTGC GCAAAAACCC ACGCCTCCAA AAACCCGATC CCCCCGCAAG
GCCTCCAGTC GGGGTTCCTC GACCGCGGAG ACCCAACCCA CAAAAAGCTC ACCCAAAACG
GTCGAGGCGC CCAGAACCTC AAGCCCCCAG GACGACCTCG AGCGCATCAA GGGCATCGGC
CCCAAAATCG CAGCAGCACT ACAGGCTGCA GGCATCTCCA CCTACGCCCA GCTTGCCAAA
GCCAGAGAAA GCACCCTTCG CGCGGTGCTG GCCCAGGCCG GCATAAGGCT GGCCCCCAGC
CTGGGCACCT GGGCCAAACA GGCATCCTAC CTGGCCAAGG GTGATGAGCA GGGTCTGGCC
AACTACCTGC GGCGCCAACG GTCATCCAAG CGTGGGCTGT AA
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| Protein sequence | MSYRQTWPGA REFHVSKEAR DFYQFDLSLF SLSGNVILAD FEAARRFAEA MNAKRDLLRH
PEQAVHPSQI NAMGLIDELL HLIVRQYLEA HPHAMQEALA ALKRNLGPDA VEQALRAFAA
LFPPIRVYRG EISLDEYLAD TTEGRSNREI QLEEMLLLWM ANANPAFAPF AELFDDETLE
RTTAYLPIIQ NLETFFEGQP AFGQSGLSLF KTLRLPALQH PHSLEAQLEF LLQRFGGSLG
RFYYRMLVGL DVIREEGRSF AAPVHFDGPG GGGGGESEML DIRRLLSEPE PEAFSPDLDW
MPRCVLIAKN TYVWLDQLSK KYRREIRTLD QIPEEELAQL QSWGVTGLWL IGLWERSKAS
ARIKQRMGNP EAIASAYALY DYVIARELGG EEALEVLRQK AARHGLRLAS DMVPNHVGID
GRWVMEHPDW FIQLPYPPYP SYTFNGPDLS SDERVGIFLE DHYYDKTDAA VVFKWVNRQT
GEVRYIYHGN DGTAMPWNDT AQLNYLLPEV REAVIQAILH VARQFPIIRF DAAMTLAKRH
VQRLWWPEPG GSPWGASVPS RAAFAMSKED FDRAMPREFW REVVDRVAVE APNTLLLAEA
FWMMEGYFVR TLGMHRVYNS AFMNMLRDEK NAEYRQIVKN TLEFEPEILK RFVNFLNNPD
EKTAIEQFGK GDKYFGVMTL CATLPGLPML GHGQVEGLTE RYGMEYRRAY YDEAPDEGLI
AYHQQQIFPL LKKRHLFAEV ENFVFYDAQT GDAVNEDVFV YSNRAGSERA LVVYHNKNAE
TQVWVRQSVA QPFKTAQGRE TRRVGLGQGL QLSYDARTFS IFRDLVTGLE HLHSNQALHE
QGLYLELGPY QRKVFLDWRE VYDADGTYAR LAQMLSGRGV PSVDEARQEL WLGPILQPFR
ALVSPALFRR LLAARGGLDG ALREEVQEKL LALYRGIEAH VEGNLALLPV QQVLDGLAGV
LEAGLHDDLV TGGALLGWAF TRGLGSPARL EEWRLGRVLE QTLAELGLEE AAARRAVGLT
RLLLAQSELA LKPGRLPQQM PRLLQDPAVQ SFLGVNRFEG RVYFNREAHQ AWLEGLGKLG
QALYLAQRKP AAQHEKLRTT WQTLQYKLEQ AALDSGFTVD GYLRAIAQKP TPPKTRSPRK
ASSRGSSTAE TQPTKSSPKT VEAPRTSSPQ DDLERIKGIG PKIAAALQAA GISTYAQLAK
ARESTLRAVL AQAGIRLAPS LGTWAKQASY LAKGDEQGLA NYLRRQRSSK RGL
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