Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mrub_1013 |
Symbol | |
ID | 8879102 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Meiothermus ruber DSM 1279 |
Kingdom | Bacteria |
Replicon accession | NC_013946 |
Strand | - |
Start bp | 1004292 |
End bp | 1006820 |
Gene Length | 2529 bp |
Protein Length | 842 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | |
Product | PKD domain-containing protein |
Protein accession | YP_003506798 |
Protein GI | 291295400 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000167268 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.298358 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAACATC TTTGGAAGTT GGCTCTGGTA AGCGTGCTTG TGCTGATAGC AGCCTGCAAC GGGCAAAGGC CAAACGGAAC CGCTCAGATT GTCGTAGACA ATACCCTTAC ACCTACCCAG GCTACGATAC CCGGCCCGGA CGGCCCACGC CCGGTGGCCC GCATGGTGGG TGAGAGTGGT ATCGCAATGG ATTTTGTTCT TGGAGAGCTG ATAATCAGCA CCGACGACCC TGCCAAGCTC AACGCCTTCC TTAGCCGCTG GGGTGGGCAG GTGCTGAGCG AGACCGAAAA GGTGGGTGAC GCACCCAAAA CATATCAAGT GCGCCTCAAC CCTTCCGGTG CCCAGGTGGA GGCCATACTC CAGCGGCTCA ACCAGTCGCT ACCAGATTTG AAGGGAAGGT TTAGCACCTC GAGCCCAGAA GCAGCCCAGC TTTTGGCAGT AGCCCTGAGC GAAGCCAACC AGGAAAAGAT GACCGTCACA CCTAACTTTG TGGTGCTACC TGCTGCCATT GCAGACGGCA GCACCGCCGA GGCCCCCACC CGCTCGAGCC TTTCCCCCGC CGATATTCCC TACACCCCCA ACGCCTTCAA CTGGACTTAC ATGAACCGGG GCAGCGCCCA GGACATCGGG GTGGGCGAGG CCTGGCGGCT GTTAGAGCGG GCTGGACGCT TGAGCAACCG GGTTCGCATC ATGATTTTGG ATGGTGGCTT CGCACTCAAC AACGACTTCC CCGCCACCCG TCAGGTGGTG GGGAGCTGGA ACGAGTCCAG CCTACTCCAG TGCTCCGGGG GCAACTCCTG CCCTTGGCAC GGTACGCACG TCACCACCGC AGCCATGGGT CGTCCAGACA ATGGCTTCGG GGTTGCTGGC CCAGCAGGCC CGGTTGGAGA GCTTTTGGCA GTTCCTTTTC AAGGAGACTT TATTGGTATC ATCTCCACCC TCGAGCGCAT CATTACCGCT ACCCTGTTCG GGAACCCCAA GATCATCAAT ATGAGCTTTG GTTTTGAGCT TGACCTGGGC TGGGACATCG CAGTTAAGGT GGCTTGCTTA GGGTTGTGCC CCTCTCCCAG CGAGGTGATG GATGGCTTTG CGGTAGCAGT TTCAGCAACC GGCAAACTCC TTTTTGCTGC TGCTGGCAAC GAGGGTAAGG ACGTAGACAA CGGTGGTGGC ATCGAGGGTT CAACCCATAT CCCTTGTGAA CTACGCTCGG TAATCTGCGT AGGCGGGATG GCCCACGACA GCACCGCCCG CGACCTTGGC TCCAACTTCG GAACCAAGCG AGATGACAAC AGCGTAGACA TCTATGGGCC TTTCTGGGTA TGGGCCGGCC CGGATCCTGA GAGCCCTGCC AATGAGGCCC GGCTTCGAGC AGGTACCAGC TACTCCTCTC CCTTCGTGGC CGGCGTAGCC GCGCTGGTCT GGGCTGCCAA CCCCTCTTTG AGCGCCAGCC AGGTCTGGGC TATTCTGCGC GACACCGCCC ATGTGGGGGG GGTGGGGGTC GGAGGCTTTG AGCGCCGGGT AAACGCTTTT GCAGCGGTCT CCAGGGCGCT GGAAGTAGGC AGCAGCGGCC CTAGCGTGGC CCTGAGCGCT GCCAGCACTG CCGACCTCAA CCGCGAGTGG AGCATCACCG CCAACGTTAC CGACTTTGCC GGGAACAACT GCCTCCCTGT CTTCTGCCCG CTAACCTTTG ACCCAGCCCC AACCCGAACC GTTGGCAACA CCGCCTATTA TCGCTTCAAT ACTGCCGCGA GCCGCACCAT ACGGGTGACC ACCCGCGATC TGCTGGGCCG CGAGGGCAGC GCCACGCGCG AGGTCACCGT CATCAACACC GCGCCGGTGG TTCGCATTGA CGCACCCTCC AATGGCGACT CGTTCTACCA GGGCCAGACC GTCAACCTGG TCGGCACTGC CACCGACCTC AACGAAGGCC CCGACCCCGG CCCTGGCCCC ATTGCGTGCC GCTGGGAGGG CAGCGCCGCC GACGGTTTCC CCCGCACCGG CTGCAACCTC TCGGTTACCT TTAGCACGAC CGGCTCGCGC ACCCTTACGC TTCGGGCCAC CGACCCGCAG GGCCTGAGCA GCACTGCCAG TGTAACCATC AACATCACGC TCCCGCCGGC CAACCTGCCC CCCAACATTA ACACCTTCGG CCCGCTGTCC CCTTCAGAAC CCAACTACTC TGGCGGATTC TCCTGGAACA CCACCTTTAC CGCCCCCGCC AGTGCCACCG ACCCCGAAGG CAACAACCCC ATCACCTACA TCTGGCGGGC CACCTCCTAC CGCCCCGATA ACGATAGCGT GGTCTGGCGC AGCAACGTGG TGCTGAGCAC CTCCACCACC AGCGGCAACC TGAGCTGGAC GCCGAGCACC AACAACCCCA GCAATCTGCT AGGTGATGAA TCCACCTTTG GTAACGCCTG CTATAACGGC CAACTGGTGC GCCTCGAGCT GGTCGCCCGC GATTCCCTGG GCCACGAGAG CACCCGGAGT TTCGCCGCCA TTCGGATATA CCGCTGCATC GTAATCTAG
|
Protein sequence | MKHLWKLALV SVLVLIAACN GQRPNGTAQI VVDNTLTPTQ ATIPGPDGPR PVARMVGESG IAMDFVLGEL IISTDDPAKL NAFLSRWGGQ VLSETEKVGD APKTYQVRLN PSGAQVEAIL QRLNQSLPDL KGRFSTSSPE AAQLLAVALS EANQEKMTVT PNFVVLPAAI ADGSTAEAPT RSSLSPADIP YTPNAFNWTY MNRGSAQDIG VGEAWRLLER AGRLSNRVRI MILDGGFALN NDFPATRQVV GSWNESSLLQ CSGGNSCPWH GTHVTTAAMG RPDNGFGVAG PAGPVGELLA VPFQGDFIGI ISTLERIITA TLFGNPKIIN MSFGFELDLG WDIAVKVACL GLCPSPSEVM DGFAVAVSAT GKLLFAAAGN EGKDVDNGGG IEGSTHIPCE LRSVICVGGM AHDSTARDLG SNFGTKRDDN SVDIYGPFWV WAGPDPESPA NEARLRAGTS YSSPFVAGVA ALVWAANPSL SASQVWAILR DTAHVGGVGV GGFERRVNAF AAVSRALEVG SSGPSVALSA ASTADLNREW SITANVTDFA GNNCLPVFCP LTFDPAPTRT VGNTAYYRFN TAASRTIRVT TRDLLGREGS ATREVTVINT APVVRIDAPS NGDSFYQGQT VNLVGTATDL NEGPDPGPGP IACRWEGSAA DGFPRTGCNL SVTFSTTGSR TLTLRATDPQ GLSSTASVTI NITLPPANLP PNINTFGPLS PSEPNYSGGF SWNTTFTAPA SATDPEGNNP ITYIWRATSY RPDNDSVVWR SNVVLSTSTT SGNLSWTPST NNPSNLLGDE STFGNACYNG QLVRLELVAR DSLGHESTRS FAAIRIYRCI VI
|
| |