| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mrub_0518 |
|---|
| Symbol | |
|---|
| ID | 8878595 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Meiothermus ruber DSM 1279 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013946 |
|---|
| Strand | + |
|---|
| Start bp | 498649 |
|---|
| End bp | 501186 |
|---|
| Gene Length | 2538 bp |
|---|
| Protein Length | 845 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | |
|---|
| Product | Type IV secretory pathway VirB4 protein |
|---|
| Protein accession | YP_003506313 |
|---|
| Protein GI | 291294915 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.832849 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.194578 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACGA ATAGTCCTAC CAGTTTGCTC AACCGGCCTC GGGAGCGTTC GCTCACCGAG
GAGTTTCCGT ATTGGGAGAT CCACGACGGG GCGATGTTTC TTGAGGATGG GCGGTGCGAG
GTGGGGGTGG AGTTGTTGCT CCGCCCCACC CTGCTCCTAT CCCAGAACGA GCTCGAGGGC
CTCCTCTACA TGGTGCGGAG CGTGCTCAGG AACGGGGTGC CACAGGGGGC ACGAGCCCGG
CTGGTGGTGG AGGCGGCCCC GGCTCCCCAG GAAACCGTGG AGGCGTATGG GAGGGCCTTC
GACCCATCCC ACCCTACCGC CCGCTTCTTG CAGAACGAAC GCTACAGGTT CTGGAGCGAT
TTGTGGGCCA GAGGGCAGGT GATGACCCGG CGGGCCTTCC TTACCGTGCT CTACGGCAAC
AAGCGCCCCC GGCGGCTGCC GTTTGGCAAG GCTGAGCTGG CCGAGCGGGT CAAGGAGGGG
GGCAAGATCC GCGAGCGAAT CCGCATGATT GCCAAGGGGC GGGGGGTGGC GGTGCAGGAG
ATGGACTCGC AGGAGGTCTT CGGCCTGGCC TACCGCTACC TCAACCCCGG GATGCGGCAG
GCCGGGGTGC CCCGCTACCG CCCCACCTGG CAGCGCTACC CCCGCAGTGC GGTGGAGAAG
ATACCGGGGC TCAGGCCCCC CACCCTGCGC ACCCAACTGG TGCGGAGCGA GGTGGACAAC
TCCCACCGCG ACGCCCTCTA CATCGGGGGA AAGTGGGCCA GCATGTTCAC CCTCTACACC
ATCCCCGACG AGACCTATAC CGAGATGGGG GACGTGCTGG CCCTGGCCGG AGGGGGGGAG
TTCTACCTGG TGGTGGATGT CTACCACGAG CCCTACGAGA AGGCCCTGAA GGCGCTCAAG
GCGCGGGCCA GGCGGTTCTA CGCCGCCAGC GCCAACACCG AGACCTACGT TGATCCCAAC
ATCCTGGTCG GGCAGCGGGA GACCGAGGGG GCCATCCAGC ACATCTCCCA GACGGGCGAC
CACGTGTACC GGGTGGGGGT AGCCCTGATC CTGATCGAAA AGGAGCGGGA GGCCCTGGAG
CGCCGGGCGA GTCAGGTGGT GGGGCGGCTG TCGGAAATCC CCGGCAACCC TTTCCGGCAG
CTCAAGAACG GCCTCTTCGA GCCCTGGAAG AGCCGGGCCC CGTTTAGCGG GGGGATGAGC
GACGAGGTGG TGAGCCTGCT GGAATCCAAC GCCGCCGACC TGATCCCCCT CACCGGGGCC
TGGAAGGGGC ACGAGAAGCC GGTGGCGCTC TTCCACAACC GCTTCCTCTC CCTCACCCGC
ATAGACCCCT TTACCCCTAC CACCAACAAC TGGAACGGGA TTATTGCGGG CGGATCGGGC
TCGGGGAAGA CCTTTTTCAC ACAATACATT CTTTCCGAAC TGCTGCGCCG CAACGAGGTG
GACGTGGTGA TCCTCGACCG GGGACGCAAC TACGAGGCGC TGGTGGAGGC CTTTGAAGGG
GCCTTCATTG ACATCCGCCC CGGCGGGGAG ACGGCGGTCA ATATGTTCGA CCTGGACGAG
GGCGAACACA CCCCCAGCCC GGAGAAGCTC CAGGACGTGC TGCGCTTTTT GCGGGCCATC
CTCCCGGCGG GGGACGACCG CACCGAGGAG GCGGTGGAGA ACGCCATCCT GGAAGCGGCC
ATCGAGCAGA CCTACAAGCG GGCCAGCCCC GACCTGCCCC AGCCGGACGG CACGTACCGC
AAGGTCTACC AGGGGGCCCG ACTCTCTGAC CTGGTGCAAA CCCTGGTGCT GCTGGACGAG
GTGGGCAGCC GCCCGGCCTC TCCCTCGGAG AAGGAAGTCG CCCGCAAGCT GGCCTTGCGG
CTTCAGTCCT GGGTAGGTGA CAGCCCCAAG GGGCAGTTCC TTGACCGGCC TACCAGCGTC
CCCCTGGCCC GGGCGCGGGT GGTGTGCTAC GAGCTCGAGG GCCTGAAGGA CGACCTGGAG
GTGATCGGCA CGCTCCTGAT CGCCGACCTG GTGTGGAAGC GGGCCAAGAA GGGGCAGGGG
CGGCGGGTGC TGGTGGTGCT GGACGAGGCC TGGAAAGTAT TTCAAAGCCC GTATGCCTCG
CAACTGATCG AGGAGCTCTA CCGGCGCTTC CGCTTTCTGG GCGGGGGCAT CTGGAGCATC
ACCCAGAGCC TCGCAGACTT CGCCGGGGAG GGCCCCAAAG CGCTTTTGCA GAACACCAGC
TTCCACTTCC TGCTGCGCCT TTCGGGCAGC GATGCCGAGC ACGCGGTGAT GCGCGACGTG
CTGGGGATGC CCGACCGGGC CATTGCGGTA CACGCCAGGC TGACCGGGGT CAAGGGGGTG
TATTCGGAAG GCCTGGCCTG GATTCGCACC GGCGAGGGCC GGGAGGGCGA GGTGATTGTG
GTGCGGCCCA ACCCGGTGGA CTACTGGATG TTCACCACGG ACAAGGGCGA GGTGGCGCGG
CGGCGGGCGG CGGTGCAGCG CTACGGCGAC GTGATCCGGG CGGTGCGGGC GCTGGCCTAT
GGGGAGGAGA AAACATGA
|
|---|
| Protein sequence | MTTNSPTSLL NRPRERSLTE EFPYWEIHDG AMFLEDGRCE VGVELLLRPT LLLSQNELEG
LLYMVRSVLR NGVPQGARAR LVVEAAPAPQ ETVEAYGRAF DPSHPTARFL QNERYRFWSD
LWARGQVMTR RAFLTVLYGN KRPRRLPFGK AELAERVKEG GKIRERIRMI AKGRGVAVQE
MDSQEVFGLA YRYLNPGMRQ AGVPRYRPTW QRYPRSAVEK IPGLRPPTLR TQLVRSEVDN
SHRDALYIGG KWASMFTLYT IPDETYTEMG DVLALAGGGE FYLVVDVYHE PYEKALKALK
ARARRFYAAS ANTETYVDPN ILVGQRETEG AIQHISQTGD HVYRVGVALI LIEKEREALE
RRASQVVGRL SEIPGNPFRQ LKNGLFEPWK SRAPFSGGMS DEVVSLLESN AADLIPLTGA
WKGHEKPVAL FHNRFLSLTR IDPFTPTTNN WNGIIAGGSG SGKTFFTQYI LSELLRRNEV
DVVILDRGRN YEALVEAFEG AFIDIRPGGE TAVNMFDLDE GEHTPSPEKL QDVLRFLRAI
LPAGDDRTEE AVENAILEAA IEQTYKRASP DLPQPDGTYR KVYQGARLSD LVQTLVLLDE
VGSRPASPSE KEVARKLALR LQSWVGDSPK GQFLDRPTSV PLARARVVCY ELEGLKDDLE
VIGTLLIADL VWKRAKKGQG RRVLVVLDEA WKVFQSPYAS QLIEELYRRF RFLGGGIWSI
TQSLADFAGE GPKALLQNTS FHFLLRLSGS DAEHAVMRDV LGMPDRAIAV HARLTGVKGV
YSEGLAWIRT GEGREGEVIV VRPNPVDYWM FTTDKGEVAR RRAAVQRYGD VIRAVRALAY
GEEKT
|
|---|
| |