| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TK90_2699 |
|---|
| Symbol | |
|---|
| ID | 8829111 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. K90mix |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013930 |
|---|
| Strand | - |
|---|
| Start bp | 61135 |
|---|
| End bp | 63435 |
|---|
| Gene Length | 2301 bp |
|---|
| Protein Length | 766 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | |
|---|
| Product | Rad3-related DNA helicase-like protein |
|---|
| Protein accession | YP_003494652 |
|---|
| Protein GI | 290242982 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.59552 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 0.502063 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGATTC GACTCAAGTA CAGCCCCGAA CGCCTCACCG ACATCCCCGC CACCGGGCAG
AGCCGCTTCT TTCGGGAGCG CCTTCACGCC GCGGCGCATA CCGCCCGCCG CCGGCGGTTG
CCGGCTGTGG GCCTTGACTC GATTTCCATC AATCTCGGGG CACGGGATCT CGCCGTGCTG
TCCGGTCTGC GCCAGGGGGA TGAGCCGTGG TCCGAGGTAC TGAGCGAACT CCTGCACGGC
CACCTGAATC AGCCGGGTGG GGAACCACGT TCGAAGCGAA CAGAGGCCGC GGATCGGAGG
GCGGAAGGCC CGGACTGGAT GCGCCCGGAG CAGGGACGTT TCTATGCTCC GCTGGCCGAG
GGGTTGGCGG CCAATGCGAT CTTGCTGGCG GAGGCAGCCA CCGGTACCGG CAAGGGCCGC
GCGGTGGCAC AAGCGGTGGA GGATGCCCTG GCCGCCGGGC GCGAGCGGGT GGTGGTGTGC
GGGCCCACGC TGGGCGTGCT GGCGGCACTG GCGCGGGAGT TCGGATCCTG CCCAGGGCTG
AATCGACCCA TGCAGTTCTT TCTCGGCGCG GCACAATTCT TCCATGCCGG CCGCGCCCGC
CAGCTCGCCT CCTTGATGCA GTCGGGTTCC GACCCGGAGA CCCAGGCCTC GGGTTCAGCC
CTGCTGCAAT GGCTGGATGC AGGTGCGCCG GCGGGGCGAA CCGACTCGAC CGCAGCCTTC
GCGTCGGTTG AAGGACAACC GGTCTCCCAC CTGACCGATG ATCTCGCCAC GCTGCTGCCG
GATGGGTACG GGGTGGAGGA ATTGGAGCTG TCGGCGGAGG AGATCGGAGG CGACGCAGAA
AGCGAAACCG ATCCGGGGAT TCGGGCGGCA ATGGCGGCAC GGGATCTGGA AGGGGATGCG
CCGATCGTGT TCTGCACGCA CGCGATGTAC GCGCTCCACG CCCGAATGAT CGGCCTCGAG
CGCTACCTGT TGCCGCCTCA CGAGGTCCTT GTGCTTGACG AGGCCCACCA GTTCGAGGAA
AACGCCAACG CCGTCCTGTC CCCGACGGCC TCGCTGGATC AGCTCCCGCG CCTTTTGCGC
TCACTGCCCG CGGCGTTGTT GCTGAAGACG GGTAAGCGGG ACCTCGAGGC GGTCGAAGAG
GTCCTGAAGG ATTTGCACAA CCGGTTCCCC GAGCGGGGCG GGGAGATCCT GCTGTTTCCG
GGCGATGATC GCTATGCGGC GGTTCAGGTT CAGGCGGGTC GGCTGCACCA GGCCGTTGAC
GCCCTCATCG GGCGCGCGGA AAGGGCCCGC CAGCACACGG CCGATCCCGG CCTTCTCGCG
CTGCTGAAGC GGACACGCTC GATTCTCCGG GCGTCCCAGC GCGAACGGGC CCTGCTGCAA
CTGTCCTCAT CACCGGTGCG CGGCTACCTG TCGCTGGCGG TGGGTGGTCA GGGGCTGCGG
CGCCTGTTCG AGCGCATGTG GTCGCAGGTC GACGCGGCGG TGCTGATGTC GGCCACGCTT
TATGTCCCGA CACGGGATTC GCGGCGAGCC GACGTATCGG ATACGCAGGG CTGGTATTCG
GCGCGTCATC TCACTCAGGT TTTGGCGCTC CCGCGCGAGC GTCTGCGTAC CCTCAAGCCC
GTACGCCCGG ACTGGGTGCG GGGCAATGTG ATCGCCCATA TCGAGCGCAA CCCCGAGCGT
CGACCGCCCA GCACGTCGGA AACTGACCCG GCAATCTACG CCGCACTGGT TCAGCAATGG
CTGGACGATA CGGCACGGGA TCTTGCGCGG ATCACGGAGG GGGCGGAGCA GGGGACATTG
GTCCTGCTGA CGGCCTACCG GGACATCGAG GGCCTGTCCG AACGTCTGGC CGATACGCTG
GGCGAGCGTC TGATCGCCCA GGGCCCCGGC GCGCGGCTGT CCGCCCTTCG CGAGGCCTTC
GTCGCGTCGA GCCGAAACGG GGAGCGTCCG GTGTGGCTCG CCACCGGTGC CGCATGGACC
GGGATCAACC TGACGTCGGA GGGTTTGAGT CAGGTGTCGG ATCTGGTCAT CGCCCGTTTG
CCGGTGGGGC TCAACCGCTC CATTTCCCAG GCGGCGCGCA ACCGGGGGCG GGCGAACTTC
GAGTCCAAGG CGGCCGAGAC CTACTGGCAG ACCGCGCAGG GGATCGGGCG CATGGTCCGT
TCAGAACAGG ATACGGATCG GCACTTGTGG GTACTGGACC CGCGCGCCGT CATCGAGCCG
CTCTATACCC CCGTTCGCTT GCTTCTGGAG TCGTACCGGG TGTCGGACGG ACCCCGAGAT
AGTGACTGCT CCCCGCCCTA A
|
|---|
| Protein sequence | MQIRLKYSPE RLTDIPATGQ SRFFRERLHA AAHTARRRRL PAVGLDSISI NLGARDLAVL
SGLRQGDEPW SEVLSELLHG HLNQPGGEPR SKRTEAADRR AEGPDWMRPE QGRFYAPLAE
GLAANAILLA EAATGTGKGR AVAQAVEDAL AAGRERVVVC GPTLGVLAAL AREFGSCPGL
NRPMQFFLGA AQFFHAGRAR QLASLMQSGS DPETQASGSA LLQWLDAGAP AGRTDSTAAF
ASVEGQPVSH LTDDLATLLP DGYGVEELEL SAEEIGGDAE SETDPGIRAA MAARDLEGDA
PIVFCTHAMY ALHARMIGLE RYLLPPHEVL VLDEAHQFEE NANAVLSPTA SLDQLPRLLR
SLPAALLLKT GKRDLEAVEE VLKDLHNRFP ERGGEILLFP GDDRYAAVQV QAGRLHQAVD
ALIGRAERAR QHTADPGLLA LLKRTRSILR ASQRERALLQ LSSSPVRGYL SLAVGGQGLR
RLFERMWSQV DAAVLMSATL YVPTRDSRRA DVSDTQGWYS ARHLTQVLAL PRERLRTLKP
VRPDWVRGNV IAHIERNPER RPPSTSETDP AIYAALVQQW LDDTARDLAR ITEGAEQGTL
VLLTAYRDIE GLSERLADTL GERLIAQGPG ARLSALREAF VASSRNGERP VWLATGAAWT
GINLTSEGLS QVSDLVIARL PVGLNRSISQ AARNRGRANF ESKAAETYWQ TAQGIGRMVR
SEQDTDRHLW VLDPRAVIEP LYTPVRLLLE SYRVSDGPRD SDCSPP
|
|---|
| |