| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aboo_0935 |
|---|
| Symbol | |
|---|
| ID | 8827888 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aciduliprofundum boonei T469 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013926 |
|---|
| Strand | + |
|---|
| Start bp | 892598 |
|---|
| End bp | 894052 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | |
|---|
| Product | MscS Mechanosensitive ion channel |
|---|
| Protein accession | YP_003483306 |
|---|
| Protein GI | 289596610 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA TATTTGCTAT CGTTTTACTT GCGTTCGTTC TATTCCCATC CGCTTATGCT
CAGCTCCTGC CATCTACTGG AAATGTCACT ATTAGAGGAG GTGAGGAAAT AGTCGTTAAT
TTCTCCATAG TAAATACCCA GAATGAGACG GTATTTTATA CAATCAACTA CAAGGCTCCT
TATGGTTGGG ATATTAATGT AACTCCGAGC AGTGGTGTAG TAAAAGAGGG GGGTTTTCGA
ACCATTAATG TTCAAATTCA TGCGCCAAAA AGCTATGGAG TAAGTGATTT TAATCTTCCC
ATTCATGTTC TTCTTTACGA TGAGAATGGA AAAATTGGAG ATTATGTTTA TACTTTACAC
ATTTCTTACT TATCCACCCC GTTTTACCTT TTTGAAATAC CATGGCCCGA GAGTTGGGGA
TACTGGGGCA CATTCCTCAA TGTGATCATA ACTTGGGTAA TACTCACCCT TGTTCTTTAT
GTTCTCTTTC CATATCTGAA AAAGATAAGT AAATTAACAA AGACAAAAAT AGATGATATT
ATTGTTGAAA TCCTTCATAA GCCCATTACA ACATGGGTAA TTCTCTATGG TATTACCACT
GCTCTTTTGA CTCTACCTCC TCTATCCTTA ATTTTCTGGC TTATAATTGA AATTTACAAT
ATAATTGTGG TTATAATTCT AACTTGGATC TCTTATCGCA TTTTTAAAGA TATAATCATT
TACTATCTTT TCCATCTTTC TAGAACTAAA AAGGGAGATT TGGAGAATGT TCTCATTCCT
ATTCTAGAGA AACTCGGAAT TGTTACAATC GGTACGCTTG GGGGGCTTAT GATACTACAA
GTTATGGGAG TGAATGTTGG AGTTCTTCTT GCCAGCGTAG GTATTGCTGG TGTTATATTG
GGTCTCGCAG CCCAGCAGAC TTTGGGCAAT TTCTTCTCCG GACTGCATAT TTTGATAGAT
AAGGCCTTTA GAATAGGAGA TATAATAATG CTTGAAAACG ATGATGGTGT TTATAAAGTT
TTGGATGTTG GTGTTAGGAG CACAAGATTA TATGAGCTCT TTTCCAATAC AGTTGTTTTC
GTGCCAAATA GCAAACTTGC GAATACTAAT ATAATCAATT TTAACAGGCC GAATAATAAA
ATGAAGATAA GGATTGATGT GAGCGTCTCT TATGGAAGTG ATGTTGAAAA AGTAATAAAA
ACTCTAAAAG AGATTGCACT ATCTCATCCT AAGGTTCTGA GGGATGGAGA TTACGAGCCA
GTGGTTATAT TCCGCGAATT TGGAGCATCC AGTTTAAATT TCTCTCTCTA CATATGGATC
GATAATGTGA TGGAGCAGTG GAAAGTGCCA AGTGAGATAA GGGAGAGAAT AGTCAAGGTA
TTCAGAGAGA GAGGCATAGA GATACCGTTT CCGCAGGTGG ATGTGCATAT AAAGCCCTTA
AAGCCGGGTA GCTGA
|
|---|
| Protein sequence | MKKIFAIVLL AFVLFPSAYA QLLPSTGNVT IRGGEEIVVN FSIVNTQNET VFYTINYKAP
YGWDINVTPS SGVVKEGGFR TINVQIHAPK SYGVSDFNLP IHVLLYDENG KIGDYVYTLH
ISYLSTPFYL FEIPWPESWG YWGTFLNVII TWVILTLVLY VLFPYLKKIS KLTKTKIDDI
IVEILHKPIT TWVILYGITT ALLTLPPLSL IFWLIIEIYN IIVVIILTWI SYRIFKDIII
YYLFHLSRTK KGDLENVLIP ILEKLGIVTI GTLGGLMILQ VMGVNVGVLL ASVGIAGVIL
GLAAQQTLGN FFSGLHILID KAFRIGDIIM LENDDGVYKV LDVGVRSTRL YELFSNTVVF
VPNSKLANTN IINFNRPNNK MKIRIDVSVS YGSDVEKVIK TLKEIALSHP KVLRDGDYEP
VVIFREFGAS SLNFSLYIWI DNVMEQWKVP SEIRERIVKV FRERGIEIPF PQVDVHIKPL
KPGS
|
|---|
| |