Gene Aboo_0405 details

Gene Information

• Locus tag: Aboo_0405
• ID: 8827348
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aciduliprofundum boonei T469
• Kingdom: Archaea
• Replicon accession: NC_013926
• Strand: -
• Start bp: 403322
• End bp: 405505
• Gene Length: 2184 bp
• Protein Length: 727 aa
• Translation table: 11
• GC content: 45%
• Product: AAA family ATPase, CDC48 subfamily
• Protein accession: YP_003482778
• Protein GI: 289596082

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.0846413
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAAA ATAAAAATGA AGGAATAGTG GTGAAAGTAG CGGAAGCACG CTCAAGAGAT 
GTGGGGCGTG GAATTGCAAG GATAGACCCT GTTATATTTG AAAAGATGGG CTTGATGCCC 
GGAGATACAA TATTAATTGA GGGTAAGAAG AAAACAGCTG CAATGGTTAT GCGAGGATAT 
CCTGAGGATG AGGGAAGTGG GCTTATAAGA ATTGATGGAT ACACCCGCAG AAATGCTGGT 
GTTGGAATAG ATGATAAAGT CACGATAAAG AAAGTATCTG CTACACCCGC AACTCAAGTT 
ACATTCGCTC CAACTCAGCC TCTTCGCCTT ATGGGTGGAG AGGAATACCT CAAGAATCTG 
CTTGAGGGGA GGGTGATTAC CAGGGGTGAT GTCATCACGC TCAATGTTAT GGGTAATACG 
ATTGATCTCA TAGCAACAGT TGTTAAGCCC GTTAAAGATG TGGTATTGAT AACCTCCTCC 
ACCGAGATAA AAATAAGTGA GAAGCCTGCA AAGGAATCTC AAGGTATTTC GATGGTTACC 
TACGAGGATA TTGGTGGTCT CAAGGAGGAA ATAAAGAAGA TTCGCGAGAT GGTAGAGTTA 
CCGTTAAGGC ATCCAGAGCT ATTTGAGAGA TTAGGCATTG AACCACCAAA GGGCGTGTTG 
CTTTATGGAC CTCCAGGGAC AGGTAAGACC CTGCTTGCTA AGGCTGTTGC AAATGAAGCA 
AACGCCCATT TCATATACCT CAGTGGACCA GAGATAATGA GTAAATTCTA TGGCCAGAGC 
GAGGAGAATT TAAGGGAGAT ATTCAAAGAG GCACAGGATA ATGCTCCTAG CATAATATTC 
ATAGACGAAA TTGATTCCAT AGCTCCGAAG AGAGACGAGG TTAGCGGTGA GGTAGAGCGT 
AGAGTTGTGG CACAATTATT GGCTTTAATG GATGGCTTAG AATCCCGCGG TAAGGTTGTC 
GTTATAGGTG CAACCAACAG GCCAAATGCA TTGGACCCTG CGTTGCGCAG ACCTGGAAGA 
TTTGATAGGG AAATTGAAAT AGGCATACCT GGAAAGAATG CGAGGAAGGA GATACTTGAG 
ATACATACTC GCGGAGTTCC TCTTGCTGAG AATGTTGATT TGGAAAAACT TGCGGATATG 
ACCCATGGCT ATGTGGGGGC AGATTTGGCT GCACTGGTTA AAGAGGCTGC AATGCGCGCA 
TTGAGAAGGG TCATACCTGA AATTGACCTT GAAATGGAGA AAATACCGGT GGAAATACTG 
GAGAAATTGC AGGTAACTTG GGAGGACTTT ATGGACGCAT ATAGGGAAAT GCAGCCCAGC 
ACGATGAGGG AGGTGCTTAT AGAAAAGCCG AATATCCATT GGGACGATAT AGGAGGTTTG 
GAGCAGGTAA AGCAAGAGTT GCGCGAGGTT GTAGAATGGC CCATGAAGTA TCGTAAGTTA 
TTTGCTCATA TGAAGGTCAA GATTCCTAAG GGCATACTAC TTTATGGACC TCCAGGCACA 
GGTAAGACCC TGCTTGCCAA GGCAGTGGCT ACTGAGAGTG AGGCGAACTT CATAAGTGTT 
AAAGGTCCAG AGTTCCTGAG CAAGTGGGTT GGGGAGAGTG AGAAGGCCGT GCGCGAGGTA 
TTCCGTAAGG CAAGACAGGC AGCACCGGCG GTTATATTCA TAGATGAGAT AGATGCCATT 
GCACCAATGC GAGGAAGAGA TATAGGCTCC CATGTCACAG AGCGTGTGGT ATCTCAAATA 
TTGACCGAGA TGGATGGTCT GGAAGAATTG CACAATGTTA CGGTTATAGC AGCCACAAAT 
CGTCCGGATA TACTTGATCC AGCTTTACTT AGGCCCGGGA GGTTCGATCG CATAGTGTAT 
GTACCTATTC CAGATAAGGA TGCGAGAAAG GAAATCTTCA AGATACATCT CCGTGGCAGG 
CCATTGGCAG AGGATGTGGA CATAGATAAG CTTGCTGAGA AAACAGAAGG ATATACGGGC 
GCAGATATAG AGGCTGTATG CAATGAAGCA ACGATACTTG CACTGAGAGA GTTCATACAG 
AGCGGTAAGA ATCCCGATGA ACCAAAGGAT GCAAAGATTG AAATGAAGCA CTTTGAGGAA 
GCCCTGAAGA AAGTAAAACC ACTTTCAAAA GAAGAAAGAG AAATGTACGA GAGAATGGTG 
GATCGCTTTA GAAAGAGGGA ATGA 

 

Protein sequence

MKKNKNEGIV VKVAEARSRD VGRGIARIDP VIFEKMGLMP GDTILIEGKK KTAAMVMRGY 
PEDEGSGLIR IDGYTRRNAG VGIDDKVTIK KVSATPATQV TFAPTQPLRL MGGEEYLKNL 
LEGRVITRGD VITLNVMGNT IDLIATVVKP VKDVVLITSS TEIKISEKPA KESQGISMVT 
YEDIGGLKEE IKKIREMVEL PLRHPELFER LGIEPPKGVL LYGPPGTGKT LLAKAVANEA 
NAHFIYLSGP EIMSKFYGQS EENLREIFKE AQDNAPSIIF IDEIDSIAPK RDEVSGEVER 
RVVAQLLALM DGLESRGKVV VIGATNRPNA LDPALRRPGR FDREIEIGIP GKNARKEILE 
IHTRGVPLAE NVDLEKLADM THGYVGADLA ALVKEAAMRA LRRVIPEIDL EMEKIPVEIL 
EKLQVTWEDF MDAYREMQPS TMREVLIEKP NIHWDDIGGL EQVKQELREV VEWPMKYRKL 
FAHMKVKIPK GILLYGPPGT GKTLLAKAVA TESEANFISV KGPEFLSKWV GESEKAVREV 
FRKARQAAPA VIFIDEIDAI APMRGRDIGS HVTERVVSQI LTEMDGLEEL HNVTVIAATN 
RPDILDPALL RPGRFDRIVY VPIPDKDARK EIFKIHLRGR PLAEDVDIDK LAEKTEGYTG 
ADIEAVCNEA TILALREFIQ SGKNPDEPKD AKIEMKHFEE ALKKVKPLSK EEREMYERMV 
DRFRKRE