Gene Aboo_0401 details

Gene Information

• Locus tag: Aboo_0401
• ID: 8827343
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aciduliprofundum boonei T469
• Kingdom: Archaea
• Replicon accession: NC_013926
• Strand: +
• Start bp: 397669
• End bp: 399753
• Gene Length: 2085 bp
• Protein Length: 694 aa
• Translation table: 11
• GC content: 41%
• Product: DEAD/DEAH box helicase domain protein
• Protein accession: YP_003482774
• Protein GI: 289596078

Plasmid Coverage information

• Num covering plasmid clones: 38
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGAAATAT ACGATATCCC GTTGAATAGC GAATGGCTAA AAGTTTTTGA AGATGAGGGA 
ATAAGATACC TCTATCCTCC ACAGGAAGAG GCGATAAAGA AACTCTTTAG CGGGAAAAAT 
TTGGTTGTGG CAATACCTAC TGCAAGCGGT AAAACTCTAA TCGGGTATAT TGCGATTTTG 
AGGGCATTTA AGATGGGGTT GAAGAGTGTT TACATCGTAC CATTGAGAGC CTTGGCAATG 
GAGAAATACG AGGAGCTTCG CAGATTTGAA AAATTCGGAA TGAAAGTTGC CCTTGCAATG 
GGAGATTACG ATAGCCCTGC GGGATATCTG AAGTATTACG ATGTGGTCAT AGCAACTAGC 
GAGAAGATGG ATTCCATTTT AAGGCATGAT TTAGAATACG CCTACAATCT TGGAGTTGTC 
ATAGTTGATG AAGTTCATCT TTTGGGAGAG GCATCAAGAG GCCCAACTTT AGAAATGGTT 
ATCTCAAAAA TTAGGGATGT GAATGATGAG GCACAGATAA TAGCCCTATC CGCCACAATC 
AACAATTCCC AAGAAATCGC AGAATGGCTA AACGGGGAGC ATGTTTACAG CGAGTTCAGG 
CCTGTACCCC TGCGCCTTGG AGTTTATTAC GATGACACGC TTCTCTTTGA GGATGGAGAG 
AAGGTTGAAA TAAAGCACGA TGCCATAAAC ATAGGAAATT TAGTGCGAAG GAGCATAGAG 
TTAGGAGGGC AAGTGCTGAT ATTCGTGAAT AGAAGAAAAT CTGCAGAATC CCTAGCCGAG 
AAGTTGAGGA GGAGAGTAGA AGGGTATTTG AACGAGGAAG ATAAGAATGA ACTCTACGCT 
TTGTCGGATA GCATTATGGA AGAGGAGTAC ACAATATATA GCGAGAGAAT TGCAAAATTG 
ATAAGGCATG GCGTTGCCTT CCATCATGCT GGCCTGAGCA ACAGGCATAG GAGCATAGTG 
GAAAGAGCAT TCAAAAATAA GTGGCTAAAG GTTATTGTGG CAACACCCAC TCTTGCCGCT 
GGCATAAACC TTCCTTCAAG GACTGTTATT GTTAGAGATG TCACCCGCTA TGATGGTTTC 
TCAAGCGTGT ACATTCCCGT TATGGAAGTT AAGCAGATGC TTGGAAGAGC TGGAAGGCCA 
AAGTACGATA AGTATGGAGA AGGGATCATC TATGCGAGAA GTGAGAAGAG AGCCCATGAT 
TATATGGAGA TGTATATACG AGGAGAGATT GAAGATATAG AATCTCAATT ATCAAACGAG 
AGCGCACTTA GAACTCACAT ATTGGCTCTA ATAGCCAGTG ATATGATAAA CAAAGAGGAG 
GAAATTTTCG AATTTTTCAA GAAAACATTT TACGGGTTTA AAATGCCAGT GGAGAATTTA 
GAGAGAAAAA TTGAGAGAAT ATTGGATTTT CTGGAAGAAT ATGAATTCAT AAAGAGAAAG 
AGATTGCTCC TAGCCACTCC ATTGGGCAAG AGAACTTCAG ATTTATACAT AGACCCCTAT 
ACAGCCATCA TATTTCGCAA ATGCTACGAG CATAATTTTG ATATTTTTTG CATCCTTCAT 
ACCATTTCCT GCACACCAGA TATGAATCCA ATAAGAGCGA AGAGGAGTGA GTTAGAAGAG 
TTATTCAGTT TAGCCTACAC TCACGAGCTT GCCATAGACG AGTTTGATGT TGACCAAGAT 
ACTTTCTTTG GTGCCTTGAA AACTGCATCC ATACTGATGG ATTGGATTGC GGAAACATCG 
CAGGATAAAA TAATTGAGAG ATACGATATT GGGCCAGGAG ACCTACACGG AAGGGTTGAA 
CTTACAGATT GGCTCCTATA CGCATTTGGA GAGATTGGAA AAGTGCTGCA CTATCCTCAT 
ATCAGGAATG TGGAGAATTT GAGATTAAGG GTGAAATATG GAGTTAAGGA GGAGCTCTTG 
CCCATCGTGT CCCTCAGGGG AGTAGGTAGA GTCAGAGCGA GGAGATTATT TGACTCTGGC 
TTTGATTCAA TAGAAAAATT GAAAAGGGCA AATGTGAGCA CATTGATTAT AATACCCGGA 
ATCGGAAGAA AATTGGCGGA AGAGATACTG AAGCAGGTTA AATAG 

 

Protein sequence

MEIYDIPLNS EWLKVFEDEG IRYLYPPQEE AIKKLFSGKN LVVAIPTASG KTLIGYIAIL 
RAFKMGLKSV YIVPLRALAM EKYEELRRFE KFGMKVALAM GDYDSPAGYL KYYDVVIATS 
EKMDSILRHD LEYAYNLGVV IVDEVHLLGE ASRGPTLEMV ISKIRDVNDE AQIIALSATI 
NNSQEIAEWL NGEHVYSEFR PVPLRLGVYY DDTLLFEDGE KVEIKHDAIN IGNLVRRSIE 
LGGQVLIFVN RRKSAESLAE KLRRRVEGYL NEEDKNELYA LSDSIMEEEY TIYSERIAKL 
IRHGVAFHHA GLSNRHRSIV ERAFKNKWLK VIVATPTLAA GINLPSRTVI VRDVTRYDGF 
SSVYIPVMEV KQMLGRAGRP KYDKYGEGII YARSEKRAHD YMEMYIRGEI EDIESQLSNE 
SALRTHILAL IASDMINKEE EIFEFFKKTF YGFKMPVENL ERKIERILDF LEEYEFIKRK 
RLLLATPLGK RTSDLYIDPY TAIIFRKCYE HNFDIFCILH TISCTPDMNP IRAKRSELEE 
LFSLAYTHEL AIDEFDVDQD TFFGALKTAS ILMDWIAETS QDKIIERYDI GPGDLHGRVE 
LTDWLLYAFG EIGKVLHYPH IRNVENLRLR VKYGVKEELL PIVSLRGVGR VRARRLFDSG 
FDSIEKLKRA NVSTLIIIPG IGRKLAEEIL KQVK