Gene Aboo_0048 details

Gene Information

• Locus tag: Aboo_0048
• ID: 8826983
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aciduliprofundum boonei T469
• Kingdom: Archaea
• Replicon accession: NC_013926
• Strand: +
• Start bp: 48740
• End bp: 49447
• Gene Length: 708 bp
• Protein Length: 235 aa
• Translation table: 11
• GC content: 40%
• Product: putative circadian clock protein, KaiC
• Protein accession: YP_003482422
• Protein GI: 289595726

Plasmid Coverage information

• Num covering plasmid clones: 58
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGAATTA GAACTGGCAT ACCTGGATTT GATGAGTTAG TTCAAGGTGG TTTAGTTGCC 
CAGAGGGTTT ATATTATAGC GGGTCCTCCA GGCTCTGGAA AAACCACATT TGGCATACAA 
TTTCTTCTTC AGGGTGCGAA GGAGGGGGAG CGTGGACTCT TTGTATCTCT AACTGAGGAC 
CCAAAAACGA TAATTGAGGA TATATCCACA TTCAATCTGA GCTTGAAGAG ATATGCGTTA 
TCGGGCCACA TACTATTTGT GGATATGGGA CCATTGAGCA TTCAAAATTT GAATGGTGTA 
AAATCTCCCG AGAGTATTAA GAGTGCATAT GCTCAAGAGG TCTTTAGAAG AATATACGCT 
ATTGTGAAAG CAAAGGGCAT AAAGAGATTG GTTATTGATT CTGTTCTAAC CCTAAAATAT 
GGAGAGAAAA GCTTAGAGGA TGAAAGCAAA GAGATCGCAA GATTCTTCAG AAGCTTGAAA 
GATTTGAAAA TCACAGTACT AATTCTTTCA GAAATGACTG ATTTATCAAA CTACACTCCC 
GAGCATTATA TGGCCCATGG CCTTATCTTT CTCCATAATT TTCTAAACGG GCACACTATG 
ACAAGGGCAA TACAAATAAT AAAGATGAGA GGCACAGCTC ACGACTGCGA TATGCACAAG 
ATGGAGATAA CCCAAAATGG AATTAGGGTT TATTCCACGA AGGTGTGA 

 

Protein sequence

MRIRTGIPGF DELVQGGLVA QRVYIIAGPP GSGKTTFGIQ FLLQGAKEGE RGLFVSLTED 
PKTIIEDIST FNLSLKRYAL SGHILFVDMG PLSIQNLNGV KSPESIKSAY AQEVFRRIYA 
IVKAKGIKRL VIDSVLTLKY GEKSLEDESK EIARFFRSLK DLKITVLILS EMTDLSNYTP 
EHYMAHGLIF LHNFLNGHTM TRAIQIIKMR GTAHDCDMHK MEITQNGIRV YSTKV