Gene Aboo_0006 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAboo_0006 
Symbol 
ID8826939 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAciduliprofundum boonei T469 
KingdomArchaea 
Replicon accessionNC_013926 
Strand
Start bp4411 
End bp6048 
Gene Length1638 bp 
Protein Length545 aa 
Translation table11 
GC content38% 
IMG OID 
Producttype II secretion system protein E 
Protein accessionYP_003482380 
Protein GI289595684 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGCCCA AAGGAATAAA GAAATTGAAT TTCTCAATAT TTCAAGGCAT CGTAAAACCC 
CAAGTTAAAA TAAAAATCCC AAAATTCGAA GTCGGGAGAA GCAGTGATAT CACTCCAATT
CCCCCACTTG AAAAGGAAAA TTACGAAACT GTTGAAGTTT ATCCAGTTTA TCCCCCTTAT
GTTTACACTC GAATAATATA TGATAGGGAG GAGTATGAGT ATATTTATGA TTTAATAGAG
CCACCTCTCA CAGATGAAGA GCAGAGATTA CTCGATGAGA TAAATGATAC CCTTGATAGA
ACTCTAAAAT ATGAATGGGA GATTATGACC AACAAAGACA GAGAGCAATA TTTAAGGGAG
AGTGTAGACA GTTTCTTAAG GAGTAGAGAT ATAAAGATAG ATAAAATATC AAAGGAGAGA
ATACTCTATT ATGTTGTTAG GGACCATGTG GGTTATCAGA AAATCGAGGG ATTAATTAGG
GATGAATACA TAGAGGACAT ATCATGCGAT GGTGTTGGCG TTCCCATTTA TGTCTTTCAT
AAAAAATATC AGTCCATTAA AACTAAATTG GTATACAAGG ATGATGATGA GCTTAACTCT
TTCATAGTGT ATATCTCCCA GAAATGTGGA AAGCAGATAT CTGTAGCAGA GCCCATATTG
GATGGAACAA CTGCCGAGGG GCATAGAGTA CAAGCCACCT ATGGAAGAGA AGTCACTACT
AGAGGGGGAA CTTTTACTAT CAGAAGATTC AAAGAGAAGC CATTTACTCC CACAGAGTTA
GTTTTATTTG GCACTGCATC CCCAGAGATT GTTGCATATC TTTGGTTGAT GGTTGAGCAT
GGGGAGAGTG CCATAGTCAT CGGAGGTCCA GCTTGTGGAA AAACCTCCAC GCTTAATGCA
TTCTCTATGT TCATACCTCC AACCGCGAAG ATTGTTAGTA TAGAAGATAC AAGAGAAATA
AACCTTCCAC ATCAAAACTG GATTCCAGGT ACAACCAGGA GTGGTATAGG TGAGGCATCC
ATAACAGGTA AATCTGCAGG AGAAATTGAT ATGTACGATT TAGTTAGGGC TGCATTGAGG
CAGAGACCTA ACTACATAAT TGTGGGAGAG GTTAGAGGTA AAGAAACATA TACAATGTTT
CAAGCAATGG CCACAGGACA TACCACATAC TCAACGATGC ATGCAGATTC TATTGTTTCT
ATGATTCATA GACTTGAAAA TCCACCAATA AACTGCCCGA GAATTCTTAT GACCGCATTA
AACAATGTCA TTATTCAGAA AATAGTGAGA ACGAAGGAAG GAATCACTAG GAGGATTACA
CAGCTCGTGG AGAATGTTGG GTTTGAGCCA GAAACAAATG AGTTAATAAC AAATGTGGTT
TTTGAATGGG ATCAGGCCAG GGATACGCAC AAATTCAAAG GGCATAGTTA TCTATTTGAC
AAGATAATGA CTATGAAGAA CATGACCCAT AACGAAATGA TGGAGGAATT TGAAAGAAGA
GTTGATATAG TAAAATATTG GGTTAAAAAA GAGATTTTAG ATTTCAGAGA TATCTGGAAA
ACAATAGCCA ATTATTACAA GGATCCAATA GGAACTGCAG AAGAAGCACG TCTCAAACTT
GGGGAGGTGA AAAGTTGA
 
Protein sequence
MMPKGIKKLN FSIFQGIVKP QVKIKIPKFE VGRSSDITPI PPLEKENYET VEVYPVYPPY 
VYTRIIYDRE EYEYIYDLIE PPLTDEEQRL LDEINDTLDR TLKYEWEIMT NKDREQYLRE
SVDSFLRSRD IKIDKISKER ILYYVVRDHV GYQKIEGLIR DEYIEDISCD GVGVPIYVFH
KKYQSIKTKL VYKDDDELNS FIVYISQKCG KQISVAEPIL DGTTAEGHRV QATYGREVTT
RGGTFTIRRF KEKPFTPTEL VLFGTASPEI VAYLWLMVEH GESAIVIGGP ACGKTSTLNA
FSMFIPPTAK IVSIEDTREI NLPHQNWIPG TTRSGIGEAS ITGKSAGEID MYDLVRAALR
QRPNYIIVGE VRGKETYTMF QAMATGHTTY STMHADSIVS MIHRLENPPI NCPRILMTAL
NNVIIQKIVR TKEGITRRIT QLVENVGFEP ETNELITNVV FEWDQARDTH KFKGHSYLFD
KIMTMKNMTH NEMMEEFERR VDIVKYWVKK EILDFRDIWK TIANYYKDPI GTAEEARLKL
GEVKS