Gene Nmag_2879 details

Gene Information

• Locus tag: Nmag_2879
• ID: 8825738
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Natrialba magadii ATCC 43099
• Kingdom: Archaea
• Replicon accession: NC_013922
• Strand: +
• Start bp: 2959333
• End bp: 2960076
• Gene Length: 744 bp
• Protein Length: 247 aa
• Translation table: 11
• GC content: 67%
• Product: rhodopsin
• Protein accession: YP_003480994
• Protein GI: 289582528

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCGCGA GCGAAACGAT CCTCACGGGA TCCGGACTGG CACTGCTCGT CGGTGCCGGC 
GGCTTCGCAC TCGGAGCGCG AGCGCTCCCC GCAGCGACGC GCCGATTCGG CTACGCGGTC 
GTTCTCGCCT GTGCGGGTAT GGGGGTTGCG TACCTGCTCA TGGCGGCCGG CGTCCTCACC 
GTTACGACCT CCGGCCGCGA AGAGTCTGCC GTCCGGTTCC TCGGCTACTC GGTCGCAATG 
ACCGTCGGTA GCGTCGTCAT CGGTGCACTC GCCGGCGCGA GTACCCGGCG AACAGGTGCA 
CTCGTCGGTG GGAACCTGCT GGCAGTCTGG GGAACGCTCG GAAGCTGGGT GTTCAGCGGA 
ACCGGTGAAA CCGTCGCCAC AGTCCTCATC CTGGTGTCGT TTCTCGGCGT CGCCGTACTC 
CTCCTCGGAC CGATGGCACG CACTGCCAGG ACGGTCCACG CCGAACGCAC GCTCCTCTAC 
GGCAAACTCA GAAACCTGGT GTTGCTCGCC TGGGCCAGCC TGATCGTCCT CGGCGCGATT 
TCGGCGCAGA CGCTCGGCCT CACCGACGCC TTCGTCGGCC AGCTCGCCGC GACCTACGTC 
GACCTCGTCT TCCTGTTTGG CTTCGGCTTG CTCCTCTTTC GGAACGCCGA CGCACTCGAG 
TACATCGGGA CCGCTGGGGA CGCCGACACT GGGTCGCAGT CAGGCGATGA GCCGTACGCG 
AGCACGGGTG TGAGCGGCAG GTGA 

 

Protein sequence

MIASETILTG SGLALLVGAG GFALGARALP AATRRFGYAV VLACAGMGVA YLLMAAGVLT 
VTTSGREESA VRFLGYSVAM TVGSVVIGAL AGASTRRTGA LVGGNLLAVW GTLGSWVFSG 
TGETVATVLI LVSFLGVAVL LLGPMARTAR TVHAERTLLY GKLRNLVLLA WASLIVLGAI 
SAQTLGLTDA FVGQLAATYV DLVFLFGFGL LLFRNADALE YIGTAGDADT GSQSGDEPYA 
STGVSGR