| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmag_1154 |
|---|
| Symbol | |
|---|
| ID | 8823985 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Natrialba magadii ATCC 43099 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013922 |
|---|
| Strand | - |
|---|
| Start bp | 1176603 |
|---|
| End bp | 1178861 |
|---|
| Gene Length | 2259 bp |
|---|
| Protein Length | 752 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | |
|---|
| Product | alpha amylase catalytic region |
|---|
| Protein accession | YP_003479300 |
|---|
| Protein GI | 289580834 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCGCG AAAATACCGA CAGACTCGAA AGCGGCAACG GCTCTCACCA TCCCGGTCCG
CCGCGCTTCG TCACCGTCGG CGAGGGACTG GTCAACCCGA ACGGGCACGA GATGGAGACG
CGCGACGAAC TCGCACCGTG GAATCTCGAC CGCAATCCTG ACGGCGACTA TGCCTGGCAC
GTCGCAGACG CACCCGAGGG TTCGACTGCC ACTCCCACCG ACGCGCCAAT CGCGGAGTTC
GTCCCCGACG TTCCCGGCGA GTACACCCTC GTCCTCGAGG CTCCCGACGG CGAGCACGAA
CTCACGGTTC GTGCGTTTCC ACAGCAGGCG GACGAGGGCA GGGATGAACA GCTGCGTCCG
CAGGTCCGAC TCGAGACGAC TGTGGACACG GAGCAGGATC GGGAACAGGG TCAGAATCAA
AATCAGAATC AGGACCCGGA TCGAATACAG TTTGACGCGA CGGCGAATCT GGCGGGCAGC
GACGCGACAG CGGACGACGA TGACGAAACC CAAACCGACC TGACCGTCGA ATACTACGTC
GACGATCGGA GCGCACTCGA GTTGGACGAC CGGAACGGGA TTCGCATTGC TGAACTCGAG
GGGCTCGAGT ACCCCGTCTG CGTCTACGCG GTTGCGGTCA CCGACGACGG ACGGTATTCG
ATTCCTGACG CAGTGAAACT CGATTCAGCA GCCGACGCTG ACGGTGTCCA ACTCGAGCGT
CCCTTCGAAC CCCCCACCTG GGTCGAGGAC GCCATCATCT ACGAAATTTT CACGCGTCGG
TTCCCGGACC AGGACGACCC GACCTTCGAG ACGATCGCGG ATCGAGTTGA TCATCTCGCC
GACCTCGGTA TCGACGTGCT CTGGCTCACA CCGATGCTCG AGACGGACCG TGGCTTTGGC
ACGCCGGACA GCCAGGGTGG GCCGCACGGC TATCACACGG ACGACTACCT CCAGGTCGAC
CCGGATCTGG GCTCGATAGC TGATTTCGAG GCCCTGGTCG AGACCTGCCA CGACCACGAC
ATCCGAGTCG TCTTCGACCT GGTGATCAAC CACACCGGGG ATACGCATCC GTTCTACGAG
GCCGCCGTCG ACGATTCCCA TCCAGAGCAC GAGCGCTACC GCGACTGGTA CCGCTGGGAG
AGTTTCGACG AGCGAGACGC AGACACCTAC TTCGGCTGGG AGGGCATCCC GAACCTCGAT
CACAGCAACC CAGCCGTGCG CGCGTACCTA CTTGAGGTGA TCGACTTCTG GGCTCCGCTG
GTCGATGGCT TCCGCACGGA CGTCGCCTGG GGCGTCCCAC TTGGCTTCTG GACGGAAGTT
TCCGACCGAC TGCGCCGGTA CGACGCGGAG TTCTTCCTGC TCGATGAAAC CATCCCCTCG
GACGTCGAGA TGGGCGGCGG CCGGTTCCAC ATGCACCACG ACGACGTGCT GCACGATACA
CTCGAGTCGG TTGCCGCGGC GGCTGTGTCT CGAGATGCGG GCGACGACGC TGATCGGGTT
GAGGGAAGGG GGCGAGGAGA AGGGGAAGAC GACGAAGCGG AAGACGAAGA AGCAGAAACA
GAAAACAACG ACACAGACAC CGAAGACGCC GTCGCAGACA CCTTCTCCGA CATGTCCGTC
GACGCCAGCG ACGGCGCTCG CGCTATCCTC GACGCTGTCG CGGAACGAGC ACGCCGCGGT
GCACACCCCG ACTCGGAGTG GCTCCTCTAC GTCGAAAACC ACGACACCGA CCGCTTCCTC
ACCGAACACG GCCGCGACGC ACAGCGGGCC GCTGCCGCTG CCACCTTCAC ACTCCCCGGC
TCGCCGATGC TCTACTACGG CCAGGAAACC GGTCTTACCG AGCGCCGCGA ACCCATGAAC
TGGGGGTCGT TCGAGACGGA GGTACTCGAG TACTACCACC AACTCATCGA CCTGCGTCAG
TCGGTACCGG CGCTCCAGCG CGCGGCGGCA CTCGAGCGGG TGGCCTACGA GACGCCGACG
AAGCATGCAG TCGTGTACGC GCGTGACGCA TCGACGGCGG ATCGGGCGGT GCAGGCGGAT
CAAGCGGACA CCGAGGACGG ACCACAACGT GTTCTCGTCG TCCTCAATTT CAGCCCGGAA
CCGACGACAG TGCGAGTGAG CGAGCGCGTT TCGGGCCAAG ATCTGCTCTC CGGTGCACAG
GTCGTCAGCG AGAGCGACGG GGGCGACCCT GAGTGGGATC GGGCGGTGAC TGTCGATTCG
GCGGTGGTAC TCGAGTCCAC GGGATCGAGT ATGGAGTAG
|
|---|
| Protein sequence | MARENTDRLE SGNGSHHPGP PRFVTVGEGL VNPNGHEMET RDELAPWNLD RNPDGDYAWH
VADAPEGSTA TPTDAPIAEF VPDVPGEYTL VLEAPDGEHE LTVRAFPQQA DEGRDEQLRP
QVRLETTVDT EQDREQGQNQ NQNQDPDRIQ FDATANLAGS DATADDDDET QTDLTVEYYV
DDRSALELDD RNGIRIAELE GLEYPVCVYA VAVTDDGRYS IPDAVKLDSA ADADGVQLER
PFEPPTWVED AIIYEIFTRR FPDQDDPTFE TIADRVDHLA DLGIDVLWLT PMLETDRGFG
TPDSQGGPHG YHTDDYLQVD PDLGSIADFE ALVETCHDHD IRVVFDLVIN HTGDTHPFYE
AAVDDSHPEH ERYRDWYRWE SFDERDADTY FGWEGIPNLD HSNPAVRAYL LEVIDFWAPL
VDGFRTDVAW GVPLGFWTEV SDRLRRYDAE FFLLDETIPS DVEMGGGRFH MHHDDVLHDT
LESVAAAAVS RDAGDDADRV EGRGRGEGED DEAEDEEAET ENNDTDTEDA VADTFSDMSV
DASDGARAIL DAVAERARRG AHPDSEWLLY VENHDTDRFL TEHGRDAQRA AAAATFTLPG
SPMLYYGQET GLTERREPMN WGSFETEVLE YYHQLIDLRQ SVPALQRAAA LERVAYETPT
KHAVVYARDA STADRAVQAD QADTEDGPQR VLVVLNFSPE PTTVRVSERV SGQDLLSGAQ
VVSESDGGDP EWDRAVTVDS AVVLESTGSS ME
|
|---|
| |