Gene TK90_2448 details

Gene Information

• Locus tag: TK90_2448
• ID: 8808229
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thioalkalivibrio sp. K90mix
• Kingdom: Bacteria
• Replicon accession: NC_013889
• Strand: +
• Start bp: 2567856
• End bp: 2571224
• Gene Length: 3369 bp
• Protein Length: 1122 aa
• Translation table: 11
• GC content: 65%
• Product: CRISPR-associated helicase Cas3 family
• Protein accession: YP_003461674
• Protein GI: 289209608

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.416428
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 51
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAACGTCC TGTTCATTTC CCAGTGCAGC AAGAACGCCC TGCGTGAAAC CCGGCGCATT 
CTCGATCAGT TCGCGGAACG CCGCGGCGAA CGGACCTGGC AGACCCCCAT CACCCGGGAA 
GGGCTCGACA CCGTCCGGCG CATGCTTCGC AAGAGCGCGC GGCGCAACAC GGCCGTTGCC 
TGCCACTGGA TCCGTGGACG CAACCAGAGC GAGGTTCTGT GGATTGTCGG CAATGCGAGC 
CGGTTCAACC TCCGCGGCGC GGTTCCGACC AATTCGACGA CCCGCGATGT GCTGCGCAGG 
CACGACGAAA ACGACTGGCA CACCGGAGAG GACATCAAGC TGCTGGCCGC CATGGCCGCA 
CTGCTGCATG ACCTTGGCAA GGCGTGCGCG GCTTTTCAGA ACCGGCTTAC CGCGCGGGGC 
AACCCCGGAC GCAACGACTA CCGCCACGAA TGGATCAGCC TGCGAATGTT TCAGGCATTC 
GTGGGCGACG ACGATGACCG GGGCTGGCTC GAACGCCTGA AGGACACGGC CCCGACCAGT 
GATCAAGACT GGATAGACGG TCTTCTGCGC GACGGGCTGG ATCAAAAGGG CGGCTCCCCC 
TTTCGGACAC TTCCACCGCT GGCAGCGGCG ATCGGCTGGC TGGTGGTTAG CCATCACCGT 
CTTCCGCTGC TTCCGGACGA CGACGGTCGC CCGGGCGGAA AGATCAGCGG ATTTCGGACC 
GAAACCCTGC GAGGGCTTCC GGACATCATC GAGGCCAACT GGAACGAACA GCCCGGCGAA 
ACCCGTCAGG CAGCCATAAG GCCCTATTGG GAATTCCGCC ATTCGCTCCC CACGAGCAGC 
GAGAAATGGC ATCTGCGGGC CCGGCACATC GCCGAACGGC TACTGGACCG ACGGGCACAC 
GCCGGAGATA ACTGGCTCGA CAGGCCCTAT GTCATGCACG TGGCCCGCAT GAGCCTCATG 
CTTGCCGACC ATCACTATTC CAGCGTTACC GACCCGAGAA AGCGACTCAG GGGTGATCCG 
GACCACCGGC TGTACGCCAA CACCAACCGC GAAACCGGAC GGCTCAACCA GCCACTGGAT 
GAACACCTGA TCGGGGTGGA GGCCCATGCG CGTGCCATTA CCGGCGCCCT CCCCGGGGCC 
GAGCAGCACC TGCCCCGCAT CGCCCGGCAC AGGGGCTTTC GCAAGCGTGC GTCCGACCCC 
CGATTCCAAT GGCAGAACCG GGCATTCGAT CTCGCCACCT CGCTGCGGGA ACGCGCATCC 
GCCCAGGGTT TTTTCGGCAT CAACATGGCT TCCACCGGGA GGGGCAAGAC CCTGGCGAAC 
GGCCGCATCC TGTATGGACT GGCCGATCCC GAGCGAGGAA CACGCTTCTC CATCGCCCTG 
GGCCTGAGGA CCCTGACGCT GCAGACCGGA CAGGCCTATC GCCAACTGCT CAACCTGGGT 
GAGGATGAGC TGGCCATCCG CGTCGGTGGA GCCGCCAGCC GCACCCTGTT CGAACACTTC 
GAGGAACAGG CCGAACACCA CGGATCGGCC TCGGCCCAGG AATTGATGGA CGAGGACGGC 
CATGTCTACT TCGACGGCGA CTTCACGAAC CATCCGGTCC TCCGTCGCCT GAGCCGCGAC 
CCGGCCACAC GTTCCCTGAT CGCCGCACCC ATCCTGGCCT GCACCGTGGA CCACCTGACG 
CCCGCGACCG AGAGCCTGCG TGGCGGCCGT CAGATTGCGC CCATGCTGCG GCTGATGAGC 
AGCGACCTGG TGCTCGATGA AATCGACGAC TTCGGGCTGG AAGACCTGCC GGCTCTCACA 
CGCCTGGTCC ACTGGGCAGG ACTCCTGGGC TCCCGGGTGC TGCTGTCGTC CGCAACGCTT 
TCACCCAGCC TGGTGGAAGG GCTGTTCGAG GCCTATCGCG AGGGACGGCG GGAGTTTCAG 
CGCAACCGCG GTGAACCCGG GCGTCCCGTC AACATCGCCT GTGCATGGTT CGACGAATAT 
TCCGCCCAGC ACCAGGATTG CGCGGACCAG CCGCAGATCG CGGCCGCCCA TCGCCAGTTT 
GCGCAGGCCC GCAAGGCCCG GCTGGCCCGC GAACCGGTTC GCCGCAGTGC CACACTGGCC 
CCGGTTGCCA TTACGAGCAC CGAATCGCGC GAGGAGACCC GACACCAGTA TGCGGACGAT 
CTTCGTGAGC ATGCACTGGA ACTGCATCGG CAACACCACG CCACGGACCC CGAAAGCGGA 
AAGCGAATCA GCTTCGGACT GATCCGGCTG GCCAACATCG AACCCCTTGT CGATATTGCG 
CGCCATATCT TCCGGGAAGG CGCCCCGGAA GGACACCGCC TCCACCTGTG TGTCTATCAC 
TCGCGTTTTC CGCTGGTGAC CCGGTCGGAA ATCGAAAGAA ACCTCGACAC GCTGCTGAAC 
CGGAAAGCCC CCGATGCGGT ATTCCAGGCA CCGGCGGTGC GCCGGCTTAT CGACTCCAGC 
CCCGAACCGG ACCAGCTGTT TGTCGTGATC GGGTCGCCCG TGACGGAGGT GGGGCGCGAT 
CACGACTACG ACTGGGCCGT CGTGGAGCCA TCCTCGATGC GTTCGATCAT CCAGCTTGCC 
GGGCGTGTCC GGCGTCACCG GGAGCCGGCC AACAGTTGCC CCAACATCAT TCTGCCGCGG 
AAAAACCTGA AGGCGCTGGA AACCCCGAAC AAACCGGCCT TCTGCCGTCC CGGCTTCGAG 
AGCGAGACGC ACCGGCTGCG CAGCCATGAT CTTCAGGAGC TTCTACGCCA GGAAGAATAC 
GCCCGGGTGG ACTCCATCCC CAGAATTCTC GAGCCCGAAC CACTGCAGCC GACGGGTTAC 
CTGGTGGACC TCGAACATGC ACGCCTTCGC GACACGGTCG CACCCCGAGA CACCGGACCG 
TCACCCGAGA CCCTGTCTCC CAGAGAACGC CGGGCATGCA AGTCCGACAG CCCCCCGCCG 
CTGAACGCCG CATCCTGGTA TCAGGTTTCC CGCGCCAGCC TGACCGGCAC GCTCCAGCGC 
ATCCAGCCAT TCCGCGAGGC GTCCGCGCTG GAGGAGATCG AACTGGTCCT GATGCCGGAT 
GACAGCGGCG AAGACTGGCA GCTGCAGCAG ATCTGGAGCG CCCCGGGGAA ACGGGGAAAG 
TCGGTCTATA TCGATGTCGA GAAGAGCCTT CTCCTGCGCG AAGACCTGGA GGACAACATC 
GGCCCCCGAA CCGACGTCTG GATCACGAGC CCCTACATGG ATGCCCTCAC GAGCCTCGCC 
GACGAGCTGG AGATGCCTCT CGAGGAATGC GCCCGGCGCT TCGGGACCGT CTCGGTGCCG 
AAGCACGAAA GCGGCTGGCG TGTTCACGAC ACCCTTGGTT TCACCGTGCG GCATCCGGCC 
AGGCAATAA 

 

Protein sequence

MNVLFISQCS KNALRETRRI LDQFAERRGE RTWQTPITRE GLDTVRRMLR KSARRNTAVA 
CHWIRGRNQS EVLWIVGNAS RFNLRGAVPT NSTTRDVLRR HDENDWHTGE DIKLLAAMAA 
LLHDLGKACA AFQNRLTARG NPGRNDYRHE WISLRMFQAF VGDDDDRGWL ERLKDTAPTS 
DQDWIDGLLR DGLDQKGGSP FRTLPPLAAA IGWLVVSHHR LPLLPDDDGR PGGKISGFRT 
ETLRGLPDII EANWNEQPGE TRQAAIRPYW EFRHSLPTSS EKWHLRARHI AERLLDRRAH 
AGDNWLDRPY VMHVARMSLM LADHHYSSVT DPRKRLRGDP DHRLYANTNR ETGRLNQPLD 
EHLIGVEAHA RAITGALPGA EQHLPRIARH RGFRKRASDP RFQWQNRAFD LATSLRERAS 
AQGFFGINMA STGRGKTLAN GRILYGLADP ERGTRFSIAL GLRTLTLQTG QAYRQLLNLG 
EDELAIRVGG AASRTLFEHF EEQAEHHGSA SAQELMDEDG HVYFDGDFTN HPVLRRLSRD 
PATRSLIAAP ILACTVDHLT PATESLRGGR QIAPMLRLMS SDLVLDEIDD FGLEDLPALT 
RLVHWAGLLG SRVLLSSATL SPSLVEGLFE AYREGRREFQ RNRGEPGRPV NIACAWFDEY 
SAQHQDCADQ PQIAAAHRQF AQARKARLAR EPVRRSATLA PVAITSTESR EETRHQYADD 
LREHALELHR QHHATDPESG KRISFGLIRL ANIEPLVDIA RHIFREGAPE GHRLHLCVYH 
SRFPLVTRSE IERNLDTLLN RKAPDAVFQA PAVRRLIDSS PEPDQLFVVI GSPVTEVGRD 
HDYDWAVVEP SSMRSIIQLA GRVRRHREPA NSCPNIILPR KNLKALETPN KPAFCRPGFE 
SETHRLRSHD LQELLRQEEY ARVDSIPRIL EPEPLQPTGY LVDLEHARLR DTVAPRDTGP 
SPETLSPRER RACKSDSPPP LNAASWYQVS RASLTGTLQR IQPFREASAL EEIELVLMPD 
DSGEDWQLQQ IWSAPGKRGK SVYIDVEKSL LLREDLEDNI GPRTDVWITS PYMDALTSLA 
DELEMPLEEC ARRFGTVSVP KHESGWRVHD TLGFTVRHPA RQ