| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TK90_2396 |
|---|
| Symbol | |
|---|
| ID | 8808177 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. K90mix |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013889 |
|---|
| Strand | - |
|---|
| Start bp | 2516761 |
|---|
| End bp | 2522259 |
|---|
| Gene Length | 5499 bp |
|---|
| Protein Length | 1832 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | |
|---|
| Product | CheA signal transduction histidine kinase |
|---|
| Protein accession | YP_003461622 |
|---|
| Protein GI | 289209556 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.412957 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACCCA GCGCACTGAA TTGGGTCCGC GACGAGCTCG ACAAGCTCTT TGTCGAACTC
CAGGACGCCC TGCGGCGCTA TGCCGAGGAC CCTGCCTGTA GCGAGTGCCT CGATGAGGCC
CGCGCGGGAC TGGAGCAGAT TCGCGGCACC CTGACCATGG TGCAGGTCGA GAGCGTGGTC
CTGATCTGCG ACGAGATGTT GCAGGTGATG GATCTGCAGC AGGGAGCCGA GCCGCCCAGC
CCGGAGGCAA CCGAGGCGCT CTTGCGCGCC GCGCTGCAGT TGCCCGACTA CCTTGAGCAG
GAGGGCGACT CGGAACTGCC TTCGCCGATG ATCCTGGTCC CGTTGCTCAA CGAGCTGCGT
GCAGCGCGGG GCGCCACCTT GCTGATGGAC GTCGCGGCCT TGATGCCGGA TCTGCAGGTG
GTGGACGACG GTCGAGTCGG GGCCGGTGGT GAGGCGCTAC AGCCTGAGGA GCGCGCACGG
CGCCTGCAAG AGGCCCGTCG CGGCTTTCAG CGCGAACTTC TCGAGTTGGT TCGCGGTGAT
GTGATCGCGG CGGCTCGCCG CCTGAAGCCC GTGGCACAGC AGATCGAGGA AATGGTCCCC
CCGGGGGATC TCCGGCGCCT GTTCTGGATT ACCGGTGGCA TCCTGGAGTC GCTCGCGGAC
GAGGGCCTCG AGGCCAGTAC CGACATTCGC CGCCTGATCG GGCGTGTGGA CCGCGAGCTC
GGGCGATACC TGGGCATCCT CAGCGAGCAT TGCGAATCGA ACGACGATGG CTCGGAGCCC
GATCACGCCA TCCCGGATGA CCTGATCAAG ACCTTGCTGT TCCACATTGC GGGGTCAAGT
TCCGATGGCG AACAGGCGCG CGCGGTGCGC GAAGTGTTCG GTCTGGACGC GCTGCAAGGC
GACGACGGCG GAGGGGTCGG CCAGGCGGTC TATCAGAATC TGCGCGCCGC CCTGGAAGAC
GACCTGGCCG AGGTGCGCGA GCGTCTGGAC GTGCTGATGC GTTCGGAACA GCGCGGCCAA
GAGGAATTGG CCAGCCTGAG CGAACAGGTC GAGCGGATCG GCTCGACCCT GAGTCTGCTC
GGTCTGGAGG CGGGCCAGCG CCACACCGAT GCCCTGATGG AGGCCCTGAC GCCGGAGCGG
GCCGGGCAAT CCGACGAACA GGTCGACATG GAATTGGCCG AGCATCTACT GGCACTGGAG
TCGCTGCTCG AATCGGGCCT GCGTCGGCGT GCGGCCAGCG GCCCGCGTGC CGACTTTGAT
CGCCACCTGG CGGCGGCGGT CTACCAGGAG GCCCTGGTGG ACGTGCGGCG CGTGCGCGAT
ACCTTGCTCG GATACCTCTC CGGAGAAGGC GCGGATAACG GGCTGCACGA GGCCCGCAGC
GCGCTGGAGC GGGTCGACGG TGCGATGTCG ATCGGCGGTT TCGAGGCCCT GCAGGCCCTG
TTGCAGCCGT TGATCCGCTA TCTGGAGGCT CGTGCTGACG CCGGGCTGGC GGCACGCGAC
CTGGGTGAGG ACGAGGTCGG GGCGCTGGCG GAGGTGTTGA GCTCGATCGA GCTGGCGCTG
GAGTCCTCCG GGCAGCCCTG GCGCGAGCTG GATAGTGTCC ACGAGCGGGG TGTGGCCGCA
CTGCAGCGTC TGGGCGCGAT CTCCGGTGGC GATGCGGTCG AGCGCCCCGT TTCGCTGACC
GATGTGTCCC TGGGTGCAAG CGGGGAAGAA CTTTCACCGG GTGACGATAT CGAGGAGGTC
ACGGGGCAGG AAGAGCCGCT GGCCGTTTTT GCTGAGGCCG AGGAGGATAT TCCCGAGCCG
GCGGCAGTAT CCGAAACCGC TCCGGCCCCG CCGGTGCATG TCTCGAGTGC AGAACGTTTG
CACTACGACG AGTCCGTGTT GTCCTCGCAG GTTCGGGGGC CGGATATCGA TCCCGAGATT
CTCGATATCT TCCTCGAGGA AGCCGACGAG GAGATCGAAA GCCTCGGCGA GCAGTTCCCG
CGCTGGCAGG CCGCGCCCTC CGACATGGAT GCCCTGACGG TGATCCGTCG TTCCTTTCAT
ACGCTCAAGG GTTCCGGCCG CCTGGCGGGG GCCTTGCGTC TGGGGGAATT TGCCTGGGTC
GTGGAGTCAT TCCTGAATCG CCTGCTGGAA GGCGGGCAAG AGGCGGACTT CGCGACCATC
CAGGCACTTG AGGATGCAAT TGCGGTCCTG CCGGGCCTGG TGGCAGAAGT CCGTGACGAT
ACCGGCCCGG ATACCCCGGT ACTGGATATC GCCTTGCGCC TGCAGGCACT GCTGTCCGGC
GAGATGGAGC CGGCGGAGGA ATCAGCCGAG ATGCCGGCCG GTGCCGAGGA CGATTTTGCC
GCGCTCGCGC GCAGCATGGA GGCCCTGGAC TCCGCTGGCT CTGCCGAACC CGAATGGCCG
GCAGCCCCCA TTCCGGAGGC CCCGGAAGAC CAACTGGAGG CGGCGGAGCC GCTGGACCTG
GATGCACAGG AGCTGGATGC GCCCGAGGCT GCCCTCGAGC CGCCTATCCC TGCGGAACCC
GCGCTGGAAA CAAACGACGA AGCGCTCGAG CTGCCCGAGG ACGCGGGCAC CGACCCGCAA
CTCTGGCAGG TGTTCTCGGC CGAGGCCCGT ACCCATCTGG CTACCCTTCG TGAATGGATC
GACGCGTCCG GGAGCCGGCC CGACAGGGTG CCGAATCACG AGCTCGAGCG CGCACTGCAT
ACCCTGAACG GGAGTGCCCG AACGGCCGAC ATCCGTGGCA TCTACGCCGT GTGCGGCCCG
TTTGAGCGCA TCGTGCGCAT CCATCGCGAG ATGGAGTGGC CGCTGGCGGC GCGCGCCCAG
ACCCTGCTCG CCGAACTCGA GCGCTACGTG GCGGATGCAG TGGCCGACGA GCATCCCGAC
CCGCTCAAGA CCGACGCACC GCCCAAGTGG TCGCCCGAGG TCTACGAGCT CCTCGACCAT
GCGACCGCCG AGCAGTTGCT GCGCGCTACC GACGAGGATG CCGCCGAGCA GGTCCCCGAG
CCGCCACAGT CGGATGCGCA CGAATCGGCG CTTGAGCCAC CGCAACCGGA TGTCGACGAC
GCGACACCTT CGACGTCCGA GCCAGCGGAG GCCGAAGCGG TGGGCGCCGA GCCCGGCGAC
GCCGGGCTGG CGGGCGAGCC GGATGCCGGG CTGGAGGTGG AGCTGGAGGA AGAGATCGAT
CCGGAGTTCG CCGAGGTATT CATCGAAGAG GCCCGCGATA TCCTGGAGGC CGCGTTCGCG
GCCCTGGCAT CGTGGCGCGA GGCCGGCGGC CGTCCGGGGC CGGATCAGAA TGCCTTCCAG
CGCGAGGTGC ATACGCTGAA GGGCAGTGCC CGGATGGCTG GTTTCGAGGT GGTCGGGGCG
ATTGCCCATG CCCTGGAAAG TGCCTTGGGC GTGGAGACCG AGACCGGACT GGAGCCCCGA
GAAGGATTCT TCCGGCTGGT CGAGCGCGCA TTGACCGATG TCCAGCACCT GGTCGAGCGC
GGGGTCGGTA GCTGGCAGAC GAACGAAGAG GCCAGCGAGA CCCTGCCGGC CTTGCGCGAC
TGGGCATCCG GTGGTGGTGA AGAGTTCGAG AGCCAGCCGG CCCCCAGCCG TGAGGCCGAG
GACGCGGAGC CCGCGGCCCT GCTGCCGGAC GACGAGCCGG AGACCGCCGC GCAGCCCGCG
CCGATGGATG CACGCCGTAT CCAGGACCAG GTACGCATGG ATGCCGAGGT GCTGGATGCG
CTGGTCAATC ATGCCGGTGA GCTTGCGACC TTCCATCGTC GCTTCGAGCA GACGGTGGGT
CGTGTCGAAG GTCAGGTCGA TGAACTGGAG CGGACGATCG CTCGCCTGCG CGAGCAGCTG
CGCAAGCTCG AGATCGAGAC CGAGGCGCAG ATTCTGTTCC GGGTCGAGAA GGAGAGCGGT
GATGAGGCGG TGGATTTCGA TCCGCTGGAG ATGGACCGCT ATTCCGGCAT TCAGCAGCTC
TCGCGTGCGC TGGCCGAGAG TGTCAGTGAC CTTGAGGCCC TGAAGCAGGA CGTGGGTGAC
GAGCTGCAGA ATGCTGGCGG TATCCTGCTG CAGCAGCGTC GCGTGGGGAC TGATCTCCAG
GACCAGCTGA TGCGCCAGCG CATGGTGCGC TTCGCGCGTA TGGCCCCGCG TCTGCGGCGT
GTGGTACGCC AGGCCGGCGA CGACATGGGC AAGTCGGTCC GTGTGGAGTT TTCCGGGCAG
GGGGCCGAGC TCGACCGCGC ATTGCTGGAA CGGCTGGTCG CCCCGCTCGA GCACCTGCTG
CGCAATGCAA TTGCGCACGG TATTGAGGAC AGCGAGGCGC GTCGCGCGGC CGGCAAGGCG
GAAACGGGCC AGATCGTGGT GTCGCTCGAG CAGTCAGGCA GCGAGATCCG CTTGCAAGTG
ACGGACGATG GCGCCGGGAT CGATGCCCAT GCTATCCGCA CGCGCGCCGT GGAGCGCGGG
CTGCTGACAG CCGATGCCGA GATTACCGAT GCCCAGGCCC TGCAGTTGAT CCTGCAGTCC
GGGTTCTCCA CTGCCACGGA AGTGTCGCAG GTGGCCGGTC GCGGGGTGGG GCTGGATGTG
GTGAACAGCG ACGTCAAGCA ACTGGGCGGC ACGCTGGAGA TCGATTCGAC GCCCGGACGA
GGCTCGCGCT TTACCATGCG GTTGCCGTTT ACGCTGGCGA TCTCGCAGGC ATTGCTGGTG
CAGGTGGGCG AGGAGATCTT CGCCGTGCCC ATGGCGTCCG TGGAGGGCGT CGTGCGGGCG
CATGCCGAAG AGGTCGTGGC CGGCGGCGAC GGGCATGTGA GCTATCCCTA CGCCGGTCAG
GACTACGCCG TGCGGGCCCT GGGTGACCTG ATGGGTGTCG AGACACAGGC CAGTGCCAGC
CATCTGCCGG ACCACGCGTT CCCGCTGTTG CTGGTGCGCG CCGACGATCA GCGCGTGGCG
TTGCGGATCG ACGGGTTGCT GGGGAGCCAG GAAGTGGTTG TGAAATCGGT AGGCCCGGTC
CTGAGTCGTA TCCCCGGGGT CGCTGGTGCC ACTCTGCAGG GCGATGGCTC GGTCATGCTG
ATCCTCGACC TGAGCATGCT GGTCCGGTTC GCGGCGGCCA CGGCGGGCAC TGTCGAGGCG
GGCGTGCCGG CGGAGATTGC CGGTGCCCCG CGTATCATGG TCGTGGATGA CTCGATCACC
ATCCGCAAGG TTACCGCGCG TCTGCTCGCC CGCCATGGGT ACGATGTGGT CACGGCCCGC
GACGGTCTCG ATGCCGTGAC GATGCTGGAG GAGCGGCGAC CGCAGCTGAT CCTGCTGGAT
GTGGAGATGC CGCGCATGGA CGGGTTCGAG TTCGCTGCCC ATGTCCGCGA CCATCCGGAG
TTGAGTCAGG TCCCGATTAT CATGATCACA TCACGCAGTG GCACGAAGCA TCGCGAGCGT
GCCTCGCGGC TGGGTGTCAA TGGCTATCTG GGCAAGCCGT ATCTGGAGAA TGACCTGCTG
GACGAAATCC GGCGTCACCT TGAGGAGGTT CCCGCATGA
|
|---|
| Protein sequence | MAPSALNWVR DELDKLFVEL QDALRRYAED PACSECLDEA RAGLEQIRGT LTMVQVESVV
LICDEMLQVM DLQQGAEPPS PEATEALLRA ALQLPDYLEQ EGDSELPSPM ILVPLLNELR
AARGATLLMD VAALMPDLQV VDDGRVGAGG EALQPEERAR RLQEARRGFQ RELLELVRGD
VIAAARRLKP VAQQIEEMVP PGDLRRLFWI TGGILESLAD EGLEASTDIR RLIGRVDREL
GRYLGILSEH CESNDDGSEP DHAIPDDLIK TLLFHIAGSS SDGEQARAVR EVFGLDALQG
DDGGGVGQAV YQNLRAALED DLAEVRERLD VLMRSEQRGQ EELASLSEQV ERIGSTLSLL
GLEAGQRHTD ALMEALTPER AGQSDEQVDM ELAEHLLALE SLLESGLRRR AASGPRADFD
RHLAAAVYQE ALVDVRRVRD TLLGYLSGEG ADNGLHEARS ALERVDGAMS IGGFEALQAL
LQPLIRYLEA RADAGLAARD LGEDEVGALA EVLSSIELAL ESSGQPWREL DSVHERGVAA
LQRLGAISGG DAVERPVSLT DVSLGASGEE LSPGDDIEEV TGQEEPLAVF AEAEEDIPEP
AAVSETAPAP PVHVSSAERL HYDESVLSSQ VRGPDIDPEI LDIFLEEADE EIESLGEQFP
RWQAAPSDMD ALTVIRRSFH TLKGSGRLAG ALRLGEFAWV VESFLNRLLE GGQEADFATI
QALEDAIAVL PGLVAEVRDD TGPDTPVLDI ALRLQALLSG EMEPAEESAE MPAGAEDDFA
ALARSMEALD SAGSAEPEWP AAPIPEAPED QLEAAEPLDL DAQELDAPEA ALEPPIPAEP
ALETNDEALE LPEDAGTDPQ LWQVFSAEAR THLATLREWI DASGSRPDRV PNHELERALH
TLNGSARTAD IRGIYAVCGP FERIVRIHRE MEWPLAARAQ TLLAELERYV ADAVADEHPD
PLKTDAPPKW SPEVYELLDH ATAEQLLRAT DEDAAEQVPE PPQSDAHESA LEPPQPDVDD
ATPSTSEPAE AEAVGAEPGD AGLAGEPDAG LEVELEEEID PEFAEVFIEE ARDILEAAFA
ALASWREAGG RPGPDQNAFQ REVHTLKGSA RMAGFEVVGA IAHALESALG VETETGLEPR
EGFFRLVERA LTDVQHLVER GVGSWQTNEE ASETLPALRD WASGGGEEFE SQPAPSREAE
DAEPAALLPD DEPETAAQPA PMDARRIQDQ VRMDAEVLDA LVNHAGELAT FHRRFEQTVG
RVEGQVDELE RTIARLREQL RKLEIETEAQ ILFRVEKESG DEAVDFDPLE MDRYSGIQQL
SRALAESVSD LEALKQDVGD ELQNAGGILL QQRRVGTDLQ DQLMRQRMVR FARMAPRLRR
VVRQAGDDMG KSVRVEFSGQ GAELDRALLE RLVAPLEHLL RNAIAHGIED SEARRAAGKA
ETGQIVVSLE QSGSEIRLQV TDDGAGIDAH AIRTRAVERG LLTADAEITD AQALQLILQS
GFSTATEVSQ VAGRGVGLDV VNSDVKQLGG TLEIDSTPGR GSRFTMRLPF TLAISQALLV
QVGEEIFAVP MASVEGVVRA HAEEVVAGGD GHVSYPYAGQ DYAVRALGDL MGVETQASAS
HLPDHAFPLL LVRADDQRVA LRIDGLLGSQ EVVVKSVGPV LSRIPGVAGA TLQGDGSVML
ILDLSMLVRF AAATAGTVEA GVPAEIAGAP RIMVVDDSIT IRKVTARLLA RHGYDVVTAR
DGLDAVTMLE ERRPQLILLD VEMPRMDGFE FAAHVRDHPE LSQVPIIMIT SRSGTKHRER
ASRLGVNGYL GKPYLENDLL DEIRRHLEEV PA
|
|---|
| |