| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TK90_1998 |
|---|
| Symbol | |
|---|
| ID | 8807772 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. K90mix |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013889 |
|---|
| Strand | + |
|---|
| Start bp | 2122640 |
|---|
| End bp | 2123854 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | |
|---|
| Product | diguanylate phosphodiesterase |
|---|
| Protein accession | YP_003461225 |
|---|
| Protein GI | 289209159 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACCCTA TTTTTGTCGG CCGGCAACCC ATCTTCGATG CGCACGAGCG CCTGGTCGGT
TTCGAACTCC TGTTTCGCGC CGGCCACCGT AGCGAGGCGG CGGTGACCAA TGGCGACGAA
GCCACCTCGG ACCTGCTGCG AAGCGCGTTC GTGGATATCG GCCTGCCCCA TCTGGTCGGT
CCGCACCTGG CCTTCGTCAA TCTGACACGG TCCTTTCTCG ACGACGACAT CATCACCGGC
CTGCCCCCCG ATCAGGTGGT CCTGGAGATC CTCGAGGACA TCGAGATCGA TTCCGAGGTC
GTCGCCGCGG TGCAAAGACT GAAGCAGCGC GGTTTTCGCA TCGCCCTGGA TGACTACCAG
TTTCAGGTCC ACCACTCGCC GCTGGTGGCG CTGGCGGACA TCGTCAAACT CGATGTACTG
GCGCTTTCCG CCGAGGCGCT GGCACGCGAG GTCGAGACGT TGCGCACGTT CGGCGTGGAG
CTGCTGGCAG AGAAGGTCGA AACCGCCGAG TGCTACCACC ACTGCCAGCA ACTCGGTTTT
CGCTACTTCC AGGGCTACCA CCTGTCGCAC CCCCACGTAA TCGAAGGCCA GCGTCTGGAG
AGCCTGGAAG TCGCCCTGCT GAAGCTGCTG AAGACCCTGC ACGATCCCCA CCCTGAACCA
TCGGAACTGG AACGCCTCAT TGGCGCCGAA CCCGATCTGG CTACCCAGAT CCTGCGCATC
GCCAACAGCC CCGCGTACCG CGCCGAACAG CCCACGGACG ATCTGGCTTC GGCGCTCGAT
CGTCTGGGGC AGGGGCGAAT CCGCCGCATC GGGATGCTGC TGGTGCTCCA CAATGCGGCC
GGGCCCTCGG CCGCGGTCGA ACAGGTCATG ATCCGCGCCC GCATGGGGAT GCTGCTCGCC
CGGGCGTGCA ATCTGACAGC CCCGGAGTGC GAGTGCCACT TCTCTCTGGG GATGCTCTCC
GGACTGGATC GCGTACTGGG CATCCCGCTG CGGCGCATCC TGAACGAACT GCACCTGGCG
CCGGAGGTGG AAGAGGCGCT GATCGAGCAC AAAGGCCCGC TGGCCCCCTG GCTGGAGACC
ATCGAGGCGT TCGAGGGGCC GGCAAACCCG CCCCCCGTCG GAGAATCCCC GGTGGCGCCA
CAGGTTGCCA GCCGGCTCTA CCTGGAATCG GTACGCTGGA CCGAGGACAT ACTCGACGCG
CTGTCCAGGA CCTGA
|
|---|
| Protein sequence | MHPIFVGRQP IFDAHERLVG FELLFRAGHR SEAAVTNGDE ATSDLLRSAF VDIGLPHLVG
PHLAFVNLTR SFLDDDIITG LPPDQVVLEI LEDIEIDSEV VAAVQRLKQR GFRIALDDYQ
FQVHHSPLVA LADIVKLDVL ALSAEALARE VETLRTFGVE LLAEKVETAE CYHHCQQLGF
RYFQGYHLSH PHVIEGQRLE SLEVALLKLL KTLHDPHPEP SELERLIGAE PDLATQILRI
ANSPAYRAEQ PTDDLASALD RLGQGRIRRI GMLLVLHNAA GPSAAVEQVM IRARMGMLLA
RACNLTAPEC ECHFSLGMLS GLDRVLGIPL RRILNELHLA PEVEEALIEH KGPLAPWLET
IEAFEGPANP PPVGESPVAP QVASRLYLES VRWTEDILDA LSRT
|
|---|
| |