| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TK90_1919 |
|---|
| Symbol | |
|---|
| ID | 8807692 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. K90mix |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013889 |
|---|
| Strand | - |
|---|
| Start bp | 2036977 |
|---|
| End bp | 2038425 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | |
|---|
| Product | RND efflux system, outer membrane lipoprotein, NodT family |
|---|
| Protein accession | YP_003461146 |
|---|
| Protein GI | 289209080 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.328582 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAAGT GGGGCTTGAC CGTTGCTGCG GCGTTCTTAC TCGGTGGCTG CGCCGTGGGG
CCGGACTATG AGCGCCCGGA CTTTGATCTT CCGGAGGATT GGCCGGAACA CGTCCTGCTC
AGTGCCGAGG AGCAGGAGGC CTGGCAGCAG TGGTGGACCC GTTACCAGGA TCCGCAGCTC
GACGCACTGG TGGCGCGGGC CCTGGACGAT AACCTGGATG TCCGTCTGCA GGTGCAACGC
ATCCAGGAGT CTCGCGCCCG TCTGGGCCTG GCGGAGGCCA ACCGGTTGCC CACGCTGGAC
GCCCAGGCAG AGGCGGCACG GGAACGGCAG CCGGAAGGGC TCTCGCCGAT CCCGGGTGGG
GGAGGCACCG ACAACCTGTT CTCGATCACG GGGATTCTGG GATATGAGCT GGATCTGTGG
GGCCGCCTCG CCCGCCAGGA GGAAGCCGCC GAGGCCTTTC TGCAACAGTC TCGGTTCAGC
CATGAGGCGG TCCGGCTGAA CGTGGTGGCG GACGTGGTCG CCACCTACGT GAATCTGCGC
AGCGCGCAGG AACAGCTGGC TATCGCCGAA AAGACGGTGG AATCCCGGGA GCGGACCCTG
GAACTGGAGC AAATCCGCTA CGAGGGCGGC CAGACGGACG CTCTGGTCTT GCGCCAGTCG
GTGGCCGAAC TGGAAACCAC GCGCGCGCGC ATCCCCTCAC TGCGTCAGCA GGTGCAGACC
CTGGAGGGGG CACTCGCGGT GCTGGTGGGC ATGTCACCGC GCGAGCTGCT GGACGAGCTG
GATTTCGGGG ATCGTCGTCT GGCCGACCTT GAACTGCCGG CGCATGTGCC TGCGGTGATG
CCATCCGAAC TGCTGCGCCG GCGGCCCGAC ATCCGCGCCG CCGAGGCGGA ATTGATGGCC
TCCACGGCCG AGATCGGCGT CGCCGAGGCG GACCGGCTTC CGCGCCTGAA CCTGATGGGG
TTCCTCGGCA CCGCCGCCAC GGAAACCAGC GACCTGTTTA CCCGCTCGGC CGAGACCTGG
GGCGTGGGCG CGACCGTGGC CGGGCCGCTG TTCGACTTCG GTCGCGCCCG GGCCCGGGTG
GAGACCGCAG AAGCCCTGCG TGATCAGGCG GAAACCCGTT ATGCCATGAC CATGACGCAG
GCGTTTCGCG AGGTGCGAGA CGCCCTGGTG CTCTACGAGG CCACCGACGA ACGTGTGGGT
GCGGTCAGGC GGCAGGTACA GGCCATCCAG GAAACGCGTG ATCTGGCGGA GATCCGGTAT
GAAGAAGGCT TTACCGGGTT TATCGAGCTG CTGGACGCTG AACGCGCGTT GCTGGACGCA
GAGCTGGCTC TGAGTGAGGC CTTGCGGGAT CGGCTCAATG CAACCGCGAC CTTGTTCAAG
GCGATGGGTG GCGGCTGGGA TGGGGAACGA TCCGCGCCCC CTCATGCGGA AGCTCGCGTT
GAGGACTGA
|
|---|
| Protein sequence | MRKWGLTVAA AFLLGGCAVG PDYERPDFDL PEDWPEHVLL SAEEQEAWQQ WWTRYQDPQL
DALVARALDD NLDVRLQVQR IQESRARLGL AEANRLPTLD AQAEAARERQ PEGLSPIPGG
GGTDNLFSIT GILGYELDLW GRLARQEEAA EAFLQQSRFS HEAVRLNVVA DVVATYVNLR
SAQEQLAIAE KTVESRERTL ELEQIRYEGG QTDALVLRQS VAELETTRAR IPSLRQQVQT
LEGALAVLVG MSPRELLDEL DFGDRRLADL ELPAHVPAVM PSELLRRRPD IRAAEAELMA
STAEIGVAEA DRLPRLNLMG FLGTAATETS DLFTRSAETW GVGATVAGPL FDFGRARARV
ETAEALRDQA ETRYAMTMTQ AFREVRDALV LYEATDERVG AVRRQVQAIQ ETRDLAEIRY
EEGFTGFIEL LDAERALLDA ELALSEALRD RLNATATLFK AMGGGWDGER SAPPHAEARV
ED
|
|---|
| |