| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TK90_1870 |
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| Symbol | |
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| ID | 8807643 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. K90mix |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013889 |
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| Strand | - |
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| Start bp | 1986516 |
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| End bp | 1989794 |
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| Gene Length | 3279 bp |
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| Protein Length | 1092 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_003461097 |
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| Protein GI | 289209031 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.227053 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTGGGCG TGCTGTGGAT CATCCTGTCC GATGTCGCTG TTGCCTGGTG GCTGGGCACC
GGCATCGGCG ATGTATTAAC CCTGGCCAAT CTCGGCAAGG GCCTCGGATT CATCATCGTG
TCGGCTTTGG CCCTTTATCT GGCGATGAGT TGGAGCGCCG TCGGGCAACT GGCCGGCGCC
CGCGCGTCAT CGTTGACGTC CTCTACCCCG AGGCGTTTTG GCCCAAAGCG CTTTGGAGCG
GGTGGCTGGA CGGTGCTGGC CCTTGCAGTC GCCCTGTCCA CGACCGGTAT GGCGTTTGGT
ACCTGGCAGA TCCAGGCGAC CTCCGCGAAG GATCAGGCGC GTGAGGATCT GCGCCGATCG
GCCTTTCTCA AGGGTGGCCT GCTGGACCGC TGGCTGGCGG AGCGCGAGGG TGATGCGATG
GTGCTCGCCC AGGCGCGGGA CTTCTCCGTC TTTGCGCGAA CCGCCGTTCT GGTGCAGTCG
CCGCTGGCGC TGGAACAGGT ACGTCATCGC CTGGAGTTGA TGCATGAGCG TTACGACTAC
GACGCCATTT CGCTGATCGA CCGGGACTGG CGGCCCATCG TGGAGGTGGG GCATAACTCG
CTGGACGATG TCGCGGTGGA CAAGGCGGTC ACGGAGGCCC TGGTCAGCGG TGAGGTAAGT
GCCCCCTACC TGCATGCGAA TGCCCGGGGC GAGGTGCGGA TTAGCTGGGC GGTCCCGGTA
GCGGACCGAG TCGATCCGGA CGGCGAGCCG GTCGCCGTGG TCGTGCTGTC CTCCGGGATC
GAGATGTTGC GTGCGCTGCT GACCGTTGGC GAGGAGGCGG GGACGGTGGA TCCCCATGTG
GTGGCCCGGG ACGACACACG CTGGGCCACG ATTGCACGAA TCGAGGCACA GGGCGGCCAT
ATCATCGACC CGCCGGAGGC CTTCGCGCGC TTGCGCCACG AGATTCTCGA CCGTGAACGA
GAGGGTGTTA GCGTAGCGCT GTTCGATGAT GCCGATGGGG GGTTTCTGGC GGGCGTCCAG
CCGCTGTCGG CACCGGGATG GGACCTGATC CTCAAGCGCA ATGTTGCGTC CCTGGCGATC
GCACCCCGCC AGCAGGCGCT ATGGATGGGG GCCGCCACGC TGTTTGTCTG GTTGATCATG
CTGGCGGCCG GTGGCCTGCT CTGGCGCCAG CAGTGGCTGC GCCAACATCT GGTACTAATG
CATTCGCATG CCGAGCAGGA CCGTCTGCTG CGGCTGTACT TCGATATGCC GTTTCTGGGT
ATGGCGATCT CGTATCCGGG CGGCAGGGGC TGGGAGCGGG TCAATCCGTT CCTGGCACAG
ATGCTCGGCT ACTCGCCGGA AGAACTGGTC CGGACCGACT GGGATCGTCT GGCCGTACCC
GAGGATCGCA GCTGCGAAGC GCCGCTCGAT GCGGCCATGC AGGCCGGCGA GCGCGACGGG
TACAGCATCG AGAAGCGGCT ACTGAGACGG GATGGCCGGG TGCTCGTCGC GGACATCGAT
GTGAAATGCA CGCGCACGGC CGATGGCGCC ATCGATCGCG TAGTCGCGAC CATTGAGGAC
ATCACCGAAC GCCGGGAGCA GGAGGAGCGC CGGCGGCTGG CGTCGGTGGT GTTCGAGAAC
ACCCGCGAGG GTGTGGTGAT TACCGACGCC ACCGCCCACA TCCTGTCGGT CAATCGTGCA
TTCACCGAGT TGATGGGATA TACCCAGGAC GAGGTCGTGG GGCGCACGCC CAAGATGTTC
CAGTCGGGGC GACACGACCA GGCCTTCTAC GCCAACATGC GGCGTCAACT CGAGACGGAA
GGGCACTGGC AGGGCGAGAT CTGGAACCGG CGCAAGACCG GCGAGATTTT TCCCGAACTG
CAAAGCATCA CGGCAGTGCG CGATGACCAG GGTCGCCTGA CCCACTATGT CTCCGTGTTC
GCGGATATCT CCCGTCTCAA GGCCTCGGAG GCCGAGCTCG ACTTTCTCGC GCACCATGAC
CCCCTGACCG AGCTGCCCAA CCGCCGGTTG CTGCGGGCCC GACTGGCGCA GGCGATCGCG
CTGATGCGGC GACGTAATGG TTTACTGGCG ATCCTGATCA TCGACGTCGA CCGTTTCAAG
GACATCAACG ACTCGAGAGG GCATGCCGCG GGTGATCGCC TGCTGAAGAT CGTCGCCGAT
CGCCTCCAGG CGGGGCAGCG GGGTACCGAC ACGGTCGCCC GCCTGGCCAG CGACGAGTTT
GCCGTGCTGG CGGACAATCT GGCGCATGTG GACGATGCCG CGCTGGTCGC CGAGGACATC
CTTCGCGAAG TGGGACGCCC GGTCGATCTC GGCGACGGCG TCGAATTTGA GATTGCGGCG
ACGATTGGCA TCGCCGTGTT CCCGGACCAC GGGGCGGATG CCGAGACGTT GCTGCAGCAG
GCCGGTACCG CGCTGTCGCG TGCCAAGGAG GACGGGCGTG GCGGCTATCG CTACTACTCG
GATGCGTTCA CCGAGGCGGC CCGCGAACGC ATCGACCTGA ATGCGCGGCT GCGGCGCGCG
ATCGAGCAGG ACAGCCTTGA GGTTCACTAC CAGCCGCAGT ATCGCGTCAG TGATGGTGTG
CTGATCGGGG CCGAGGCCCT GCTGCGCTGG ACCGACCCCG AACTGGGCCC CGTATCGCCC
GGACGCTTCA TCCCGGTAGC GGAGCAGACG GGCCTGATCG TGGAGCTGGG TGACTGGGTG
CTGCGGCGTG TGCTGGCGCA GGGGCAGGCC TGGCGCGATG CCGGCTATCC GGCTGTACGC
CTGGCGGTGA ATGTCTCCGC ACTCCAGTTT CAGCGGGTGG CGATCGACCA TCAGGTGGCC
GATCTGCTGG AGGGGCATGG TTATCCGGCC AAGTACCTGG AACTGGAGAT TACCGAGTCG
GCGCTGATGT CCGACCCCGA GCGCGCCCGG CGTATCCTCC AGCGCCTGCG CGAGCGGGGC
GTGAGCTTCG CGGTGGACGA TTTCGGGACC GGGTATTCGT CCATGGCCCA GCTCAAGCGC
TTCCCGGTCG ATACGCTGAA GGTCGACAAG AGTTTCGTGG ATGGCCTGGC GGCGGGTGCG
CACGATGCCG ATGATCGCTC GATTGCGCGG GCGATCGTGG CGCTGGGGCA CGGGCTGGGC
CTGAGCGTGC TGGCCGAGGG GGTCGAGACC CGCGAGCAGC TCGGCGCGCT GCGCGAGCTG
GGCTGCGATC ACTACCAGGG TTATCTGGCC AGCCGCCCGC TACCTGCCGA GCATTTTGCC
GCGCTGCTGG CCGAAGGATT GGTGGCGGAA GAGTATTAG
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| Protein sequence | MLGVLWIILS DVAVAWWLGT GIGDVLTLAN LGKGLGFIIV SALALYLAMS WSAVGQLAGA
RASSLTSSTP RRFGPKRFGA GGWTVLALAV ALSTTGMAFG TWQIQATSAK DQAREDLRRS
AFLKGGLLDR WLAEREGDAM VLAQARDFSV FARTAVLVQS PLALEQVRHR LELMHERYDY
DAISLIDRDW RPIVEVGHNS LDDVAVDKAV TEALVSGEVS APYLHANARG EVRISWAVPV
ADRVDPDGEP VAVVVLSSGI EMLRALLTVG EEAGTVDPHV VARDDTRWAT IARIEAQGGH
IIDPPEAFAR LRHEILDRER EGVSVALFDD ADGGFLAGVQ PLSAPGWDLI LKRNVASLAI
APRQQALWMG AATLFVWLIM LAAGGLLWRQ QWLRQHLVLM HSHAEQDRLL RLYFDMPFLG
MAISYPGGRG WERVNPFLAQ MLGYSPEELV RTDWDRLAVP EDRSCEAPLD AAMQAGERDG
YSIEKRLLRR DGRVLVADID VKCTRTADGA IDRVVATIED ITERREQEER RRLASVVFEN
TREGVVITDA TAHILSVNRA FTELMGYTQD EVVGRTPKMF QSGRHDQAFY ANMRRQLETE
GHWQGEIWNR RKTGEIFPEL QSITAVRDDQ GRLTHYVSVF ADISRLKASE AELDFLAHHD
PLTELPNRRL LRARLAQAIA LMRRRNGLLA ILIIDVDRFK DINDSRGHAA GDRLLKIVAD
RLQAGQRGTD TVARLASDEF AVLADNLAHV DDAALVAEDI LREVGRPVDL GDGVEFEIAA
TIGIAVFPDH GADAETLLQQ AGTALSRAKE DGRGGYRYYS DAFTEAARER IDLNARLRRA
IEQDSLEVHY QPQYRVSDGV LIGAEALLRW TDPELGPVSP GRFIPVAEQT GLIVELGDWV
LRRVLAQGQA WRDAGYPAVR LAVNVSALQF QRVAIDHQVA DLLEGHGYPA KYLELEITES
ALMSDPERAR RILQRLRERG VSFAVDDFGT GYSSMAQLKR FPVDTLKVDK SFVDGLAAGA
HDADDRSIAR AIVALGHGLG LSVLAEGVET REQLGALREL GCDHYQGYLA SRPLPAEHFA
ALLAEGLVAE EY
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