Gene TK90_1870 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTK90_1870 
Symbol 
ID8807643 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThioalkalivibrio sp. K90mix 
KingdomBacteria 
Replicon accessionNC_013889 
Strand
Start bp1986516 
End bp1989794 
Gene Length3279 bp 
Protein Length1092 aa 
Translation table11 
GC content66% 
IMG OID 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_003461097 
Protein GI289209031 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.227053 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTGGGCG TGCTGTGGAT CATCCTGTCC GATGTCGCTG TTGCCTGGTG GCTGGGCACC 
GGCATCGGCG ATGTATTAAC CCTGGCCAAT CTCGGCAAGG GCCTCGGATT CATCATCGTG
TCGGCTTTGG CCCTTTATCT GGCGATGAGT TGGAGCGCCG TCGGGCAACT GGCCGGCGCC
CGCGCGTCAT CGTTGACGTC CTCTACCCCG AGGCGTTTTG GCCCAAAGCG CTTTGGAGCG
GGTGGCTGGA CGGTGCTGGC CCTTGCAGTC GCCCTGTCCA CGACCGGTAT GGCGTTTGGT
ACCTGGCAGA TCCAGGCGAC CTCCGCGAAG GATCAGGCGC GTGAGGATCT GCGCCGATCG
GCCTTTCTCA AGGGTGGCCT GCTGGACCGC TGGCTGGCGG AGCGCGAGGG TGATGCGATG
GTGCTCGCCC AGGCGCGGGA CTTCTCCGTC TTTGCGCGAA CCGCCGTTCT GGTGCAGTCG
CCGCTGGCGC TGGAACAGGT ACGTCATCGC CTGGAGTTGA TGCATGAGCG TTACGACTAC
GACGCCATTT CGCTGATCGA CCGGGACTGG CGGCCCATCG TGGAGGTGGG GCATAACTCG
CTGGACGATG TCGCGGTGGA CAAGGCGGTC ACGGAGGCCC TGGTCAGCGG TGAGGTAAGT
GCCCCCTACC TGCATGCGAA TGCCCGGGGC GAGGTGCGGA TTAGCTGGGC GGTCCCGGTA
GCGGACCGAG TCGATCCGGA CGGCGAGCCG GTCGCCGTGG TCGTGCTGTC CTCCGGGATC
GAGATGTTGC GTGCGCTGCT GACCGTTGGC GAGGAGGCGG GGACGGTGGA TCCCCATGTG
GTGGCCCGGG ACGACACACG CTGGGCCACG ATTGCACGAA TCGAGGCACA GGGCGGCCAT
ATCATCGACC CGCCGGAGGC CTTCGCGCGC TTGCGCCACG AGATTCTCGA CCGTGAACGA
GAGGGTGTTA GCGTAGCGCT GTTCGATGAT GCCGATGGGG GGTTTCTGGC GGGCGTCCAG
CCGCTGTCGG CACCGGGATG GGACCTGATC CTCAAGCGCA ATGTTGCGTC CCTGGCGATC
GCACCCCGCC AGCAGGCGCT ATGGATGGGG GCCGCCACGC TGTTTGTCTG GTTGATCATG
CTGGCGGCCG GTGGCCTGCT CTGGCGCCAG CAGTGGCTGC GCCAACATCT GGTACTAATG
CATTCGCATG CCGAGCAGGA CCGTCTGCTG CGGCTGTACT TCGATATGCC GTTTCTGGGT
ATGGCGATCT CGTATCCGGG CGGCAGGGGC TGGGAGCGGG TCAATCCGTT CCTGGCACAG
ATGCTCGGCT ACTCGCCGGA AGAACTGGTC CGGACCGACT GGGATCGTCT GGCCGTACCC
GAGGATCGCA GCTGCGAAGC GCCGCTCGAT GCGGCCATGC AGGCCGGCGA GCGCGACGGG
TACAGCATCG AGAAGCGGCT ACTGAGACGG GATGGCCGGG TGCTCGTCGC GGACATCGAT
GTGAAATGCA CGCGCACGGC CGATGGCGCC ATCGATCGCG TAGTCGCGAC CATTGAGGAC
ATCACCGAAC GCCGGGAGCA GGAGGAGCGC CGGCGGCTGG CGTCGGTGGT GTTCGAGAAC
ACCCGCGAGG GTGTGGTGAT TACCGACGCC ACCGCCCACA TCCTGTCGGT CAATCGTGCA
TTCACCGAGT TGATGGGATA TACCCAGGAC GAGGTCGTGG GGCGCACGCC CAAGATGTTC
CAGTCGGGGC GACACGACCA GGCCTTCTAC GCCAACATGC GGCGTCAACT CGAGACGGAA
GGGCACTGGC AGGGCGAGAT CTGGAACCGG CGCAAGACCG GCGAGATTTT TCCCGAACTG
CAAAGCATCA CGGCAGTGCG CGATGACCAG GGTCGCCTGA CCCACTATGT CTCCGTGTTC
GCGGATATCT CCCGTCTCAA GGCCTCGGAG GCCGAGCTCG ACTTTCTCGC GCACCATGAC
CCCCTGACCG AGCTGCCCAA CCGCCGGTTG CTGCGGGCCC GACTGGCGCA GGCGATCGCG
CTGATGCGGC GACGTAATGG TTTACTGGCG ATCCTGATCA TCGACGTCGA CCGTTTCAAG
GACATCAACG ACTCGAGAGG GCATGCCGCG GGTGATCGCC TGCTGAAGAT CGTCGCCGAT
CGCCTCCAGG CGGGGCAGCG GGGTACCGAC ACGGTCGCCC GCCTGGCCAG CGACGAGTTT
GCCGTGCTGG CGGACAATCT GGCGCATGTG GACGATGCCG CGCTGGTCGC CGAGGACATC
CTTCGCGAAG TGGGACGCCC GGTCGATCTC GGCGACGGCG TCGAATTTGA GATTGCGGCG
ACGATTGGCA TCGCCGTGTT CCCGGACCAC GGGGCGGATG CCGAGACGTT GCTGCAGCAG
GCCGGTACCG CGCTGTCGCG TGCCAAGGAG GACGGGCGTG GCGGCTATCG CTACTACTCG
GATGCGTTCA CCGAGGCGGC CCGCGAACGC ATCGACCTGA ATGCGCGGCT GCGGCGCGCG
ATCGAGCAGG ACAGCCTTGA GGTTCACTAC CAGCCGCAGT ATCGCGTCAG TGATGGTGTG
CTGATCGGGG CCGAGGCCCT GCTGCGCTGG ACCGACCCCG AACTGGGCCC CGTATCGCCC
GGACGCTTCA TCCCGGTAGC GGAGCAGACG GGCCTGATCG TGGAGCTGGG TGACTGGGTG
CTGCGGCGTG TGCTGGCGCA GGGGCAGGCC TGGCGCGATG CCGGCTATCC GGCTGTACGC
CTGGCGGTGA ATGTCTCCGC ACTCCAGTTT CAGCGGGTGG CGATCGACCA TCAGGTGGCC
GATCTGCTGG AGGGGCATGG TTATCCGGCC AAGTACCTGG AACTGGAGAT TACCGAGTCG
GCGCTGATGT CCGACCCCGA GCGCGCCCGG CGTATCCTCC AGCGCCTGCG CGAGCGGGGC
GTGAGCTTCG CGGTGGACGA TTTCGGGACC GGGTATTCGT CCATGGCCCA GCTCAAGCGC
TTCCCGGTCG ATACGCTGAA GGTCGACAAG AGTTTCGTGG ATGGCCTGGC GGCGGGTGCG
CACGATGCCG ATGATCGCTC GATTGCGCGG GCGATCGTGG CGCTGGGGCA CGGGCTGGGC
CTGAGCGTGC TGGCCGAGGG GGTCGAGACC CGCGAGCAGC TCGGCGCGCT GCGCGAGCTG
GGCTGCGATC ACTACCAGGG TTATCTGGCC AGCCGCCCGC TACCTGCCGA GCATTTTGCC
GCGCTGCTGG CCGAAGGATT GGTGGCGGAA GAGTATTAG
 
Protein sequence
MLGVLWIILS DVAVAWWLGT GIGDVLTLAN LGKGLGFIIV SALALYLAMS WSAVGQLAGA 
RASSLTSSTP RRFGPKRFGA GGWTVLALAV ALSTTGMAFG TWQIQATSAK DQAREDLRRS
AFLKGGLLDR WLAEREGDAM VLAQARDFSV FARTAVLVQS PLALEQVRHR LELMHERYDY
DAISLIDRDW RPIVEVGHNS LDDVAVDKAV TEALVSGEVS APYLHANARG EVRISWAVPV
ADRVDPDGEP VAVVVLSSGI EMLRALLTVG EEAGTVDPHV VARDDTRWAT IARIEAQGGH
IIDPPEAFAR LRHEILDRER EGVSVALFDD ADGGFLAGVQ PLSAPGWDLI LKRNVASLAI
APRQQALWMG AATLFVWLIM LAAGGLLWRQ QWLRQHLVLM HSHAEQDRLL RLYFDMPFLG
MAISYPGGRG WERVNPFLAQ MLGYSPEELV RTDWDRLAVP EDRSCEAPLD AAMQAGERDG
YSIEKRLLRR DGRVLVADID VKCTRTADGA IDRVVATIED ITERREQEER RRLASVVFEN
TREGVVITDA TAHILSVNRA FTELMGYTQD EVVGRTPKMF QSGRHDQAFY ANMRRQLETE
GHWQGEIWNR RKTGEIFPEL QSITAVRDDQ GRLTHYVSVF ADISRLKASE AELDFLAHHD
PLTELPNRRL LRARLAQAIA LMRRRNGLLA ILIIDVDRFK DINDSRGHAA GDRLLKIVAD
RLQAGQRGTD TVARLASDEF AVLADNLAHV DDAALVAEDI LREVGRPVDL GDGVEFEIAA
TIGIAVFPDH GADAETLLQQ AGTALSRAKE DGRGGYRYYS DAFTEAARER IDLNARLRRA
IEQDSLEVHY QPQYRVSDGV LIGAEALLRW TDPELGPVSP GRFIPVAEQT GLIVELGDWV
LRRVLAQGQA WRDAGYPAVR LAVNVSALQF QRVAIDHQVA DLLEGHGYPA KYLELEITES
ALMSDPERAR RILQRLRERG VSFAVDDFGT GYSSMAQLKR FPVDTLKVDK SFVDGLAAGA
HDADDRSIAR AIVALGHGLG LSVLAEGVET REQLGALREL GCDHYQGYLA SRPLPAEHFA
ALLAEGLVAE EY