Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TK90_1826 |
Symbol | |
ID | 8807598 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thioalkalivibrio sp. K90mix |
Kingdom | Bacteria |
Replicon accession | NC_013889 |
Strand | - |
Start bp | 1939366 |
End bp | 1940025 |
Gene Length | 660 bp |
Protein Length | 219 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | |
Product | outer membrane lipoprotein carrier protein LolA |
Protein accession | YP_003461053 |
Protein GI | 289208987 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.119174 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.00000680848 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACTGTCC GACTTGTTCC CCGTCTGTTG CTCGCCCTGG CCGCGACGAC GATGTTCCTG TTCGCCGGAC CGCTGGCGGC CGAGCGCGGC CCGGCACCGG ATGCGCGCGC GGCGCTGGAC CGTTTTGTCG AGGGACTGGA GACCTTTACC GCCGAATTCA CGCAGACGGT GCGCGACGAG ACGGGCTATG TGCTGCAGGA GTCGGATGGT TCGATGCAGC TGGGCATGCC CAACCGTCTG CGCTGGGAGG TGACCGAGCC CTTCCCGCAG ACGATTGTCT CCGATGGCGA GGACCTGTGG ACCTATGACC CGGACCTGGC GCAGGCGACC GTGCGCCCGC TGGGAGATGC CTTCGATGCG ACACCGATCG CGGCGATCAC CCAGCCGGAG CGGCTGGACG AGCACTTCCG CATGGATGTG CTGCCGGTAC GGGACGCCTC GGCGCTGCGC CTGCTGCTGA TCCCGCGCAA CGAGCAGGCG GACTTCACCC ACCTCGAGCT GGACCTGACG CCGGATGGCG ATCTGACCCG CATGGCCTTT CGCGACATCT TTGGTCAGGA GACCGAAATT CACTTCGAGC GAAGCGAGCG CAATGCGCCG GTCGACGAGT CCGTGTTTAC GTTTGATCCG CCGTCCGGGG TGGATATCTA TCGGCCGTAG
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Protein sequence | MTVRLVPRLL LALAATTMFL FAGPLAAERG PAPDARAALD RFVEGLETFT AEFTQTVRDE TGYVLQESDG SMQLGMPNRL RWEVTEPFPQ TIVSDGEDLW TYDPDLAQAT VRPLGDAFDA TPIAAITQPE RLDEHFRMDV LPVRDASALR LLLIPRNEQA DFTHLELDLT PDGDLTRMAF RDIFGQETEI HFERSERNAP VDESVFTFDP PSGVDIYRP
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