| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TK90_1573 |
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| Symbol | |
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| ID | 8807342 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. K90mix |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013889 |
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| Strand | - |
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| Start bp | 1668847 |
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| End bp | 1670751 |
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| Gene Length | 1905 bp |
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| Protein Length | 634 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_003460806 |
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| Protein GI | 289208740 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.883555 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAACC GTGGGCTGGA ACGTCTGCTG CGCTTGCCGC GCGGCAAGAA GCGCTGGCTG
ATGATTGCCG CGGACGCGGT CATGCTGCCG CTGGCGCTGT GGTCGGGCTT CGCGATCCGC
CTCGCGGAGC CGTTCCCCCC GATCATGCAG CAGACCTGGT GGCTATTCCC ACTGGTGGTG
ATCGTGGGGA TCCCGCTGTT TGCGCGTCTG GGCTTGTATC GGGCCGTGGT GCGCTTTATG
GGGTCGCGCA CGATCTGGAC GGTGGGTTCT GGTGTGGTCA TCCTGGCGAT GACGGTCTGG
GCAGCGGTCG CCATCGCCCA GGTGGAGAGC TTTCCGCGTT CGGTCCCGAT CAATTTTGCG
ATCGTGGCCT TCCTCTATGT CGGTGGTAGT CGCTTCTTGG TGCGGGCGTG GTACCGATCG
GTGATGGCCG CGGCACCGGG TGCAGAAGCG GTGGTGGTGT ATGGAGCGGG CGAGGCGGGC
GTGCAGCTGC TGTCCGCGCT GAAGGGTGGT GGCGGGATGT TCCGCGTGGT GGCCTTCGTG
GACGAGGATC GAGCCCTGCA GGGCAGCTCG ATTGACGGCG TCCCGGTCTA CAGCCCCCGG
CGCCTGCAAC GGCTGATTGA CCAATGGCAT GTGCGGCGCG TGCTGCTCGC CGTTCCCACG
GCTACGCGTC AGGAGCGGCG CCGCATCCTG GAACAGCTCG AGCCGTTCTC ACTGTATGTG
CAGTCGGTCC CGTCGATGGA GGCGGTGGTC TCCGGGCAGG CCAGCCTGGA ACAGCTGGAA
GACATTGATG TGGCGGACCT GCTGGGGCGG GACCCGGTAC CCCCCGACCC CGAGCTGCTG
GCCTGCAGCA TTCGCGGGCG CGTCGTCATG GTGACCGGCG CCGGGGGCTC CATTGGCTCT
GAGCTGTGCC GCCGAATCAT CCGGTTGCAG CCGGCAGCGC TGATTCTGTA CGAGCGCAAC
GAGTTTGCGC TGTACAGCAT CGAGCGCGAG ATGCAGGACT ACTCACTGCA ACTGGACCCG
TCCCCGGCGG TACACGCCGT ACTCGGGTCC GTGGCGAACC CGCGTCGCGT CCGCTCTGTA
CTGGCCGAGC ATGGCGTGCA GACCCTGTAC CATGCGGCGG CCTACAAGCA TGTGCCGATC
GTCGAGGCCA ACCTCATTGA GGGTGTGCGC AACAACGTGG TCGGTACCGC CGTGATGGCC
GAAGCCGCGC AGGCGGCAGG CGTCGAACGG TTCATTCTGA TCTCCACGGA CAAGGCCGTG
CGCCCGACCA ACGTGATGGG GGCCACCAAG CGCCTGGCGG AGATGGTGCT GCAGGACCGG
GCGCGGGAGG GCCGGGGTAC GGTCTTCAGC ATGGTGCGCT TCGGCAACGT TCTCGGTTCC
TCGGGCTCCG TGGTGCCACT TTTCCATCAG CAGATCCGCG ATGGCGGGCC TGTCACCGTC
ACCCATCCCG AGATCACCCG CTATTTTATG TCCATCCCCG AGGCGGCCGA GCTGGTGATC
CAGGCGGGCG CGATGGCGCA GGGGGGCGAG GTGTATGTGC TGGATATGGG AGAGCCGGTA
CGCATTGTCG ACCTCGCGCG CCGCATGATT CGGCTACACG GCCGACAGGT AAAAGAGGAC
GGATACCCCG AGGACGGGAT CGAGATCGTG TTCACCGGGC TGCGCCCGGG CGAGAAGCTC
TATGAAGAGC TGTTGATCGG AGACAACGTG GAGCCCACCG CGCATGTGAA GATCATGCGC
GCCCGCGAGG AATGTGCCGC TTCGAGCGAC CTGCGCGCCG CAATGAAACG CCTGGACCGT
GCGGACCGTG AAATGGATAC CGAAATCGCC TGCCAGACCA TCCGCGATGT CGTGCATGGC
TACGCGCCCG CCAACCATCC GCCGCAAGAA CGTTTCGCTG AGTAG
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| Protein sequence | MLNRGLERLL RLPRGKKRWL MIAADAVMLP LALWSGFAIR LAEPFPPIMQ QTWWLFPLVV
IVGIPLFARL GLYRAVVRFM GSRTIWTVGS GVVILAMTVW AAVAIAQVES FPRSVPINFA
IVAFLYVGGS RFLVRAWYRS VMAAAPGAEA VVVYGAGEAG VQLLSALKGG GGMFRVVAFV
DEDRALQGSS IDGVPVYSPR RLQRLIDQWH VRRVLLAVPT ATRQERRRIL EQLEPFSLYV
QSVPSMEAVV SGQASLEQLE DIDVADLLGR DPVPPDPELL ACSIRGRVVM VTGAGGSIGS
ELCRRIIRLQ PAALILYERN EFALYSIERE MQDYSLQLDP SPAVHAVLGS VANPRRVRSV
LAEHGVQTLY HAAAYKHVPI VEANLIEGVR NNVVGTAVMA EAAQAAGVER FILISTDKAV
RPTNVMGATK RLAEMVLQDR AREGRGTVFS MVRFGNVLGS SGSVVPLFHQ QIRDGGPVTV
THPEITRYFM SIPEAAELVI QAGAMAQGGE VYVLDMGEPV RIVDLARRMI RLHGRQVKED
GYPEDGIEIV FTGLRPGEKL YEELLIGDNV EPTAHVKIMR AREECAASSD LRAAMKRLDR
ADREMDTEIA CQTIRDVVHG YAPANHPPQE RFAE
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