| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TK90_1504 |
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| Symbol | |
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| ID | 8807270 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. K90mix |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013889 |
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| Strand | + |
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| Start bp | 1600106 |
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| End bp | 1602940 |
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| Gene Length | 2835 bp |
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| Protein Length | 944 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_003460744 |
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| Protein GI | 289208678 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.628866 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.0653987 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCGCC CGCTCTGGTG GGCCTGCGGG GCATTCATGC GCCTGAACGT CGCCTGGCAG
ATCATCATTG GCACCGTCGC GATCCAGGTC GCGATGGTGG GAGCGCTGCT CTTTAGCGGA
ATCACCCAAG TCCAGCAGAA CCAGCAGGAG GTCCTGGAGC GCACCGCCGA ACAACAAAGC
CGCCTGCTGG GATCTGCGCT GACACCGGGC CTCGCTTACG CCGATCCCGC GATGCTCCAG
GACCTCCTCG ACCTGCTGGG AGACGACTCC AACGTCCTCT ACGCGGTCGT ACTCGACGCC
AGCGAGCGCC CCATGGCCTC GGTCGGCGTC GCCCCGGACG CCCTCCCCGC CCCCGAGGCA
GGTGTGCGCA GTGAATCCGG CCAGGTCGAG ATTGCCCGGG GCATCGAGCT TTCCGGCCAG
CCTCTGGGTA CCGTGGCGGT CGGCTACTCG ACCGATGCGA TCGACCAGCT CTCGACCAAT
CTTCTGGAAC GCAATGTCTT GCTGGCCCTG GGCGTGCTGG GGCTCTCGAT CCTCGCGGCC
ATTTTATTCG CCCTGATGAC GACCCGCCGT CTGCGCCTGC TCCTGCAAGG GGGCAGGGCC
CTGGAGGCCG GGCAGCTCGA CCACCGAGTA AAGATCGATT CCCGTGACGA GTTCGGCGAC
CTGGCGCGGA CGTTCAACGA CATGGCCGCC CACCTGGACA CCACACAATC GACACTACTC
CAGCAAAACC AGCAGTTGAA TCGCTCGGTA GCCCGCCTGG AATCCATGCT GGGCGGGGCC
AACGCCATCC TGTGGGAGTC GAACCCCGAG AGCCACGAAT GGGAGTTCGT CGCCGGAGAC
ACCCGCAAGC TGCTGGGCTT CCCCTCGCGC AACCTGGGGC GCGGGGAACT GCGCGCCCGG
CATATCCACC CGGATGACCT CCCCCGCGTG CGCGAGGCCG CGCACGCGGC CGGTAACGAA
CCCCAGGTGG TTGATTACCG CTTCGCCCAC CGCAACGGTC AGTGGATCTG GCTGCGCGAT
ATCCTCTCCT CGGCCGAAGA CCCCGGCAGC CGTCGCAGCC TGCGCGGACT GACGCTCGAT
GTCACCGCCC ACCGTCGGGC CGCAGCAGCA CTCAAGGAGA GCGAAAACCG CTACCAGGAT
GTCGTCAACC ACATTTCCGA GGTGATCTTC CGCACCGACG CCGAGGGCCG CTGGACCCTG
CTGAACCCGG CCTGGGAGGC CCTGACTGGA TTCAAAGTCG AAGAGACCCT TGGTCAACCC
ATGTGTGCCT TTGTCGATCC CGAAGACCGC GACGACGCAC AGAGCTTCTG TTCCACCCTG
CTCGAAGGGG GCACTCACGC GCAATCCGAG GAGATCCGCC TGCGCACGCA CGACGGCAGT
CATCGCTGGG TCAGCATCTA TGCCAGTGCG CGCTTCGATG AAGACGGCCA TATCATGGCG
ACCTTTGGCA CCATGATGGA TATCTCCGAC CGCAAGGAGG CCGAAGAGGA AATCCGGCGC
CTGGCCTTCT TCGATGGCCT GACCGGCCTG CCCAATCGAA CGCTGCTGCA CGACCGTCTG
GGCCAGGCCC TCGCCAATAC GGCGCGCACG CGTCACCACG GCGCGGTCCT GTTCATCGAT
CTGGACAACT TCAAGGACAT CAACGACACC CTGGGACACG CGGTCGGGGA TGATCTGCTG
TGCCAGGTGG CCCGACGGAT GGAGAACTCC GTGCGCGAAG CCGACACGCT CGCGCGCCTG
GGCGGCGACG AGTTCGTGAT CATCCTCAAC GACCTTCACC CCGACCCGGC GCGCGCCGCC
ACCGAGGCAG AGGCAGTCGG GCGCAAGCTG ATCAACCTGC TGCGCGAGCC CTTCCAGCTC
GCGGGCCAGA ACCGCCACGT CACCCCCAGT ATCGGTGCCA CCCTGTTCAG CGGCCGCAGC
CTCGGCGTGG AGGAGGTACT GAAACAGGCC GACCTCGCGA TGTACCGGGC GAAGAACGCC
GGGCGCAATA CCGTGCGCTT CTACGACCCC GAACTGCACC GCGCGGTGGA GGCTCGTTTC
GAACTCGAAA ACGAGCTGCG CCATGCCCTC GACGAAGACC GGTTCAGCGT GGTCTATCAG
CCGCAGGTCG ATGCCGAGGG GCGCGTCATC GGCGCCGAGT TGCTCCTGCG CTGGGAGCAC
GCACAACGCG GCGCGATCTC CCCGGCCGAG TTCATCCCCG TCGCGGAGCA GACCGGGCTG
ATCGTGCCCA TTGGGCGCAA GGTCCTGCGC ACCGCCTGTG CTCAGTTGGG GGCCTGGCAG
CACACGGCCG CCTTCCGCGA CCTGACCCTG TCGGTGAATA TCAGCGCACG CCAGTTCCGC
GATCCACACT TTGTCCCGCA TCTGCGCGAG ATCCTCCAGG AAACCGGAGC CCCGGGCGAT
CGGCTGAAAC TGGAGCTGAC CGAGAGCATG CTGCTCGAGG AAATCGACAC CGTGGTGGCC
CATATCGACG AACTGCGAGC GCTGGGCGTC GAGTTCGCCC TGGACGACTT CGGCACGGGG
TACTCCTCCC TCGCCTACCT GAAACAGCTT CCCCTGGCAC AACTGAAGAT CGACCAGTCC
TTCGTGCGCG ACGTACTGGA CGACCCCAAC GACGCCGCGA TCGCGCAGAT GGTCGTCAAT
CTCGCCCGCA CGCTGGACCT GGACGTCATT GCTGAAGGGG TCGAAACAGT CGAACAGCGG
GCCTTCTTGT TTGGCCTCGG CTGCCGCCAC TTCCAGGGCT TCCTGTACGG CTATCCTGGA
GACCTGGCGG ACCTGGAAAG GGCCGTGCTC GGGGCATCAC CCTCGTTTGA AAGTGCTGCG
CAGCCGCCCC ACTAA
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| Protein sequence | MPRPLWWACG AFMRLNVAWQ IIIGTVAIQV AMVGALLFSG ITQVQQNQQE VLERTAEQQS
RLLGSALTPG LAYADPAMLQ DLLDLLGDDS NVLYAVVLDA SERPMASVGV APDALPAPEA
GVRSESGQVE IARGIELSGQ PLGTVAVGYS TDAIDQLSTN LLERNVLLAL GVLGLSILAA
ILFALMTTRR LRLLLQGGRA LEAGQLDHRV KIDSRDEFGD LARTFNDMAA HLDTTQSTLL
QQNQQLNRSV ARLESMLGGA NAILWESNPE SHEWEFVAGD TRKLLGFPSR NLGRGELRAR
HIHPDDLPRV REAAHAAGNE PQVVDYRFAH RNGQWIWLRD ILSSAEDPGS RRSLRGLTLD
VTAHRRAAAA LKESENRYQD VVNHISEVIF RTDAEGRWTL LNPAWEALTG FKVEETLGQP
MCAFVDPEDR DDAQSFCSTL LEGGTHAQSE EIRLRTHDGS HRWVSIYASA RFDEDGHIMA
TFGTMMDISD RKEAEEEIRR LAFFDGLTGL PNRTLLHDRL GQALANTART RHHGAVLFID
LDNFKDINDT LGHAVGDDLL CQVARRMENS VREADTLARL GGDEFVIILN DLHPDPARAA
TEAEAVGRKL INLLREPFQL AGQNRHVTPS IGATLFSGRS LGVEEVLKQA DLAMYRAKNA
GRNTVRFYDP ELHRAVEARF ELENELRHAL DEDRFSVVYQ PQVDAEGRVI GAELLLRWEH
AQRGAISPAE FIPVAEQTGL IVPIGRKVLR TACAQLGAWQ HTAAFRDLTL SVNISARQFR
DPHFVPHLRE ILQETGAPGD RLKLELTESM LLEEIDTVVA HIDELRALGV EFALDDFGTG
YSSLAYLKQL PLAQLKIDQS FVRDVLDDPN DAAIAQMVVN LARTLDLDVI AEGVETVEQR
AFLFGLGCRH FQGFLYGYPG DLADLERAVL GASPSFESAA QPPH
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