Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TK90_1504 |
Symbol | |
ID | 8807270 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thioalkalivibrio sp. K90mix |
Kingdom | Bacteria |
Replicon accession | NC_013889 |
Strand | + |
Start bp | 1600106 |
End bp | 1602940 |
Gene Length | 2835 bp |
Protein Length | 944 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_003460744 |
Protein GI | 289208678 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.628866 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.0653987 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGCGCC CGCTCTGGTG GGCCTGCGGG GCATTCATGC GCCTGAACGT CGCCTGGCAG ATCATCATTG GCACCGTCGC GATCCAGGTC GCGATGGTGG GAGCGCTGCT CTTTAGCGGA ATCACCCAAG TCCAGCAGAA CCAGCAGGAG GTCCTGGAGC GCACCGCCGA ACAACAAAGC CGCCTGCTGG GATCTGCGCT GACACCGGGC CTCGCTTACG CCGATCCCGC GATGCTCCAG GACCTCCTCG ACCTGCTGGG AGACGACTCC AACGTCCTCT ACGCGGTCGT ACTCGACGCC AGCGAGCGCC CCATGGCCTC GGTCGGCGTC GCCCCGGACG CCCTCCCCGC CCCCGAGGCA GGTGTGCGCA GTGAATCCGG CCAGGTCGAG ATTGCCCGGG GCATCGAGCT TTCCGGCCAG CCTCTGGGTA CCGTGGCGGT CGGCTACTCG ACCGATGCGA TCGACCAGCT CTCGACCAAT CTTCTGGAAC GCAATGTCTT GCTGGCCCTG GGCGTGCTGG GGCTCTCGAT CCTCGCGGCC ATTTTATTCG CCCTGATGAC GACCCGCCGT CTGCGCCTGC TCCTGCAAGG GGGCAGGGCC CTGGAGGCCG GGCAGCTCGA CCACCGAGTA AAGATCGATT CCCGTGACGA GTTCGGCGAC CTGGCGCGGA CGTTCAACGA CATGGCCGCC CACCTGGACA CCACACAATC GACACTACTC CAGCAAAACC AGCAGTTGAA TCGCTCGGTA GCCCGCCTGG AATCCATGCT GGGCGGGGCC AACGCCATCC TGTGGGAGTC GAACCCCGAG AGCCACGAAT GGGAGTTCGT CGCCGGAGAC ACCCGCAAGC TGCTGGGCTT CCCCTCGCGC AACCTGGGGC GCGGGGAACT GCGCGCCCGG CATATCCACC CGGATGACCT CCCCCGCGTG CGCGAGGCCG CGCACGCGGC CGGTAACGAA CCCCAGGTGG TTGATTACCG CTTCGCCCAC CGCAACGGTC AGTGGATCTG GCTGCGCGAT ATCCTCTCCT CGGCCGAAGA CCCCGGCAGC CGTCGCAGCC TGCGCGGACT GACGCTCGAT GTCACCGCCC ACCGTCGGGC CGCAGCAGCA CTCAAGGAGA GCGAAAACCG CTACCAGGAT GTCGTCAACC ACATTTCCGA GGTGATCTTC CGCACCGACG CCGAGGGCCG CTGGACCCTG CTGAACCCGG CCTGGGAGGC CCTGACTGGA TTCAAAGTCG AAGAGACCCT TGGTCAACCC ATGTGTGCCT TTGTCGATCC CGAAGACCGC GACGACGCAC AGAGCTTCTG TTCCACCCTG CTCGAAGGGG GCACTCACGC GCAATCCGAG GAGATCCGCC TGCGCACGCA CGACGGCAGT CATCGCTGGG TCAGCATCTA TGCCAGTGCG CGCTTCGATG AAGACGGCCA TATCATGGCG ACCTTTGGCA CCATGATGGA TATCTCCGAC CGCAAGGAGG CCGAAGAGGA AATCCGGCGC CTGGCCTTCT TCGATGGCCT GACCGGCCTG CCCAATCGAA CGCTGCTGCA CGACCGTCTG GGCCAGGCCC TCGCCAATAC GGCGCGCACG CGTCACCACG GCGCGGTCCT GTTCATCGAT CTGGACAACT TCAAGGACAT CAACGACACC CTGGGACACG CGGTCGGGGA TGATCTGCTG TGCCAGGTGG CCCGACGGAT GGAGAACTCC GTGCGCGAAG CCGACACGCT CGCGCGCCTG GGCGGCGACG AGTTCGTGAT CATCCTCAAC GACCTTCACC CCGACCCGGC GCGCGCCGCC ACCGAGGCAG AGGCAGTCGG GCGCAAGCTG ATCAACCTGC TGCGCGAGCC CTTCCAGCTC GCGGGCCAGA ACCGCCACGT CACCCCCAGT ATCGGTGCCA CCCTGTTCAG CGGCCGCAGC CTCGGCGTGG AGGAGGTACT GAAACAGGCC GACCTCGCGA TGTACCGGGC GAAGAACGCC GGGCGCAATA CCGTGCGCTT CTACGACCCC GAACTGCACC GCGCGGTGGA GGCTCGTTTC GAACTCGAAA ACGAGCTGCG CCATGCCCTC GACGAAGACC GGTTCAGCGT GGTCTATCAG CCGCAGGTCG ATGCCGAGGG GCGCGTCATC GGCGCCGAGT TGCTCCTGCG CTGGGAGCAC GCACAACGCG GCGCGATCTC CCCGGCCGAG TTCATCCCCG TCGCGGAGCA GACCGGGCTG ATCGTGCCCA TTGGGCGCAA GGTCCTGCGC ACCGCCTGTG CTCAGTTGGG GGCCTGGCAG CACACGGCCG CCTTCCGCGA CCTGACCCTG TCGGTGAATA TCAGCGCACG CCAGTTCCGC GATCCACACT TTGTCCCGCA TCTGCGCGAG ATCCTCCAGG AAACCGGAGC CCCGGGCGAT CGGCTGAAAC TGGAGCTGAC CGAGAGCATG CTGCTCGAGG AAATCGACAC CGTGGTGGCC CATATCGACG AACTGCGAGC GCTGGGCGTC GAGTTCGCCC TGGACGACTT CGGCACGGGG TACTCCTCCC TCGCCTACCT GAAACAGCTT CCCCTGGCAC AACTGAAGAT CGACCAGTCC TTCGTGCGCG ACGTACTGGA CGACCCCAAC GACGCCGCGA TCGCGCAGAT GGTCGTCAAT CTCGCCCGCA CGCTGGACCT GGACGTCATT GCTGAAGGGG TCGAAACAGT CGAACAGCGG GCCTTCTTGT TTGGCCTCGG CTGCCGCCAC TTCCAGGGCT TCCTGTACGG CTATCCTGGA GACCTGGCGG ACCTGGAAAG GGCCGTGCTC GGGGCATCAC CCTCGTTTGA AAGTGCTGCG CAGCCGCCCC ACTAA
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Protein sequence | MPRPLWWACG AFMRLNVAWQ IIIGTVAIQV AMVGALLFSG ITQVQQNQQE VLERTAEQQS RLLGSALTPG LAYADPAMLQ DLLDLLGDDS NVLYAVVLDA SERPMASVGV APDALPAPEA GVRSESGQVE IARGIELSGQ PLGTVAVGYS TDAIDQLSTN LLERNVLLAL GVLGLSILAA ILFALMTTRR LRLLLQGGRA LEAGQLDHRV KIDSRDEFGD LARTFNDMAA HLDTTQSTLL QQNQQLNRSV ARLESMLGGA NAILWESNPE SHEWEFVAGD TRKLLGFPSR NLGRGELRAR HIHPDDLPRV REAAHAAGNE PQVVDYRFAH RNGQWIWLRD ILSSAEDPGS RRSLRGLTLD VTAHRRAAAA LKESENRYQD VVNHISEVIF RTDAEGRWTL LNPAWEALTG FKVEETLGQP MCAFVDPEDR DDAQSFCSTL LEGGTHAQSE EIRLRTHDGS HRWVSIYASA RFDEDGHIMA TFGTMMDISD RKEAEEEIRR LAFFDGLTGL PNRTLLHDRL GQALANTART RHHGAVLFID LDNFKDINDT LGHAVGDDLL CQVARRMENS VREADTLARL GGDEFVIILN DLHPDPARAA TEAEAVGRKL INLLREPFQL AGQNRHVTPS IGATLFSGRS LGVEEVLKQA DLAMYRAKNA GRNTVRFYDP ELHRAVEARF ELENELRHAL DEDRFSVVYQ PQVDAEGRVI GAELLLRWEH AQRGAISPAE FIPVAEQTGL IVPIGRKVLR TACAQLGAWQ HTAAFRDLTL SVNISARQFR DPHFVPHLRE ILQETGAPGD RLKLELTESM LLEEIDTVVA HIDELRALGV EFALDDFGTG YSSLAYLKQL PLAQLKIDQS FVRDVLDDPN DAAIAQMVVN LARTLDLDVI AEGVETVEQR AFLFGLGCRH FQGFLYGYPG DLADLERAVL GASPSFESAA QPPH
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