| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TK90_1315 |
|---|
| Symbol | |
|---|
| ID | 8807081 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. K90mix |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013889 |
|---|
| Strand | - |
|---|
| Start bp | 1401521 |
|---|
| End bp | 1402945 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | |
|---|
| Product | type I secretion membrane fusion protein, HlyD family |
|---|
| Protein accession | YP_003460559 |
|---|
| Protein GI | 289208493 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGC GCACGCGCAG GGACGGCCAG GGATTCGAGG CGCTTGGCCG CGGTATGGAT
CAGACCGGAA AGGTTGGTGC ACCGATGGTG GACCGCATCT TTCGCCCGTG GCTGACCAAG
GGTGGTGGCG ACCACCGCAA CTGGGCATCG GACGCCGACT GGACGCAGAT ACAGGAGCGT
CCGATCCGCG CCCGCGCGCT CCTCTACGGG ATCCTGATTA CGCTGGGCCT GCTGGTTTAT
TGGGCCTCCG TTGCTGAGAT TGACGAGGTG GCCCGCGCGG ATGGGCGGGT GATCCCGTCG
CAGAACCTTC AGGTGCTGCA GTCGATGGAC GGGGGCGTGG TCTCCGAGGT CCTGGTGCGC
GAGGGGGATG TCGTGGAACA GGGCGACGTG CTCGTGCGTG TGGACCCGAC GCGGTTTTTG
TCCGACCTGG GCGAGGCGAG GGCGAGCGAG TTCGCGTTGA AGGCGCGCCG GGCGCGCCTT
ATGGCGCTGC TGACGGAAAC CCCGTTCCTG ATCACACCAG ACCTGCAGGA AGGGCCGCAG
GCCATCGTCG AGCAGGAACA GCAGCTTTAC GAAGAAAGCC TGGATGAGCT GCGCTCGCGA
ATTCGCATTG CCGAAGAGCA GATGCGGCAA AGGCGCGAGG AGCTGAACGA GGTAAGGGCG
CGCCGCAGCC AGGCCATCCG TGCCCTGGAG CTGGCCAGTC GAGAGCTGGA GGTGACCGAA
CCGCTGGTGC AAAGCGGGGC GGTATCCGAA GTGGAGATCC TGCGCTTGCG CCGCGAGGTC
TCCAACGCCC GCGGCGATCG TGATCAGGCA ACGGCGCAGA TTGCCCGTCT GGACGCCGCG
ATCGAGGAAG CGGAAGAGAA GATCCGCGAG GTGCGGCTGA ATTTCCGCAA TCAGTGGCGT
TCGGAGCTCG CCGACACCCT TGGGCGGCTG CAGGAGCTGG CCGAGGGCAC CGAGGGCCTG
GAGGATCGCG TGCGGCTGTC CGAGGTGCGA TCACCCATGG CGGGGATTGT GCAGCGGATG
TTCATCACCA CGCGCGGTGG CGTGATCTCG CCTGGGCGCG AGGTGGCCGA GGTGGTGCCG
CTGGAGGACG AATTGCTGAT CGAGGCGCGG GTATCGCCCC GTGATATTGC CTATCTGCGC
CCGGGGCTTA ACGCCAAGGT GAAGTTTACC GCCTATGACT TCGCCATCTA CGGCGGCCTG
GATGCCACCG TGGAGCACAT CAGTCCGGAC ACGATTACCG ACGACGACGG CAACACCTAT
TACAAGGTCC GCGTACGAAC TGAGGAAACC GGGTTCGACG AGGAGCATCC GATCATGACC
GGGATGGTCA CGCAGGTGGA TATCATCACC GGGCGTCGCA CCATCCTGCA GTACCTGCTG
AAGCCGATCC TCCGCGCGGG CGAGCTGGCT TTTACGGAGC GCTGA
|
|---|
| Protein sequence | MSKRTRRDGQ GFEALGRGMD QTGKVGAPMV DRIFRPWLTK GGGDHRNWAS DADWTQIQER
PIRARALLYG ILITLGLLVY WASVAEIDEV ARADGRVIPS QNLQVLQSMD GGVVSEVLVR
EGDVVEQGDV LVRVDPTRFL SDLGEARASE FALKARRARL MALLTETPFL ITPDLQEGPQ
AIVEQEQQLY EESLDELRSR IRIAEEQMRQ RREELNEVRA RRSQAIRALE LASRELEVTE
PLVQSGAVSE VEILRLRREV SNARGDRDQA TAQIARLDAA IEEAEEKIRE VRLNFRNQWR
SELADTLGRL QELAEGTEGL EDRVRLSEVR SPMAGIVQRM FITTRGGVIS PGREVAEVVP
LEDELLIEAR VSPRDIAYLR PGLNAKVKFT AYDFAIYGGL DATVEHISPD TITDDDGNTY
YKVRVRTEET GFDEEHPIMT GMVTQVDIIT GRRTILQYLL KPILRAGELA FTER
|
|---|
| |